ggKbase home page

ACD2_17_19 Annotations

Value Algorithm Source Identity Coverage Bit score Evalue Cross references
RNA binding S1 protein similarity KEGG
DB: KEGG
41.1 426.0 282 2.50e-73 srb:P148_SR1C001G0661
RNA binding S1 domain protein n=1 Tax=candidate division TM7 single-cell isolate TM7c RepID=UPI00016B22D3 (db=UNIREF evalue=2.0e-62 bit_score=243.0 identity=37.65 coverage=79.1767554479419) similarity UNIREF
DB: UNIREF
37.65 79.18 243 2.00e-62 srb:P148_SR1C001G0661
seg (db=Seg db_id=seg from=364 to=412) iprscan interpro
DB: Seg
null null null null srb:P148_SR1C001G0661
Nucleic acid-binding proteins (db=superfamily db_id=SSF50249 from=267 to=384 evalue=2.2e-31 interpro_id=IPR016027 interpro_description=Nucleic acid-binding, OB-fold-like) iprscan interpro
DB: superfamily
null null null 2.20e-31 srb:P148_SR1C001G0661
Nucleic acid-binding proteins (db=superfamily db_id=SSF50249 from=203 to=285 evalue=1.4e-23 interpro_id=IPR016027 interpro_description=Nucleic acid-binding, OB-fold-like) iprscan interpro
DB: superfamily
null null null 1.40e-23 srb:P148_SR1C001G0661
no description (db=HMMSmart db_id=SM00316 from=287 to=358 evalue=4.1e-22) iprscan interpro
DB: HMMSmart
null null null 4.10e-22 srb:P148_SR1C001G0661
RIBOSOMALS1 (db=FPrintScan db_id=PR00681 from=26 to=44 evalue=2.9e-21 interpro_id=IPR000110 interpro_description=Ribosomal protein S1 GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412)) iprscan interpro
DB: FPrintScan
null null null 2.90e-21 srb:P148_SR1C001G0661
RIBOSOMALS1 (db=FPrintScan db_id=PR00681 from=114 to=130 evalue=2.9e-21 interpro_id=IPR000110 interpro_description=Ribosomal protein S1 GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412)) iprscan interpro
DB: FPrintScan
null null null 2.90e-21 srb:P148_SR1C001G0661
RIBOSOMALS1 (db=FPrintScan db_id=PR00681 from=226 to=247 evalue=2.9e-21 interpro_id=IPR000110 interpro_description=Ribosomal protein S1 GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412)) iprscan interpro
DB: FPrintScan
null null null 2.90e-21 srb:P148_SR1C001G0661
RIBOSOMALS1 (db=FPrintScan db_id=PR00681 from=341 to=359 evalue=2.9e-21 interpro_id=IPR000110 interpro_description=Ribosomal protein S1 GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412)) iprscan interpro
DB: FPrintScan
null null null 2.90e-21 srb:P148_SR1C001G0661
RIBOSOMALS1 (db=FPrintScan db_id=PR00681 from=302 to=321 evalue=2.9e-21 interpro_id=IPR000110 interpro_description=Ribosomal protein S1 GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412)) iprscan interpro
DB: FPrintScan
null null null 2.90e-21 srb:P148_SR1C001G0661
no description (db=Gene3D db_id=G3DSA:2.40.50.140 from=284 to=360 evalue=4.6e-19 interpro_id=IPR012340 interpro_description=Nucleic acid-binding, OB-fold) iprscan interpro
DB: Gene3D
null null null 4.60e-19 srb:P148_SR1C001G0661
no description (db=HMMSmart db_id=SM00316 from=204 to=272 evalue=3.7e-18) iprscan interpro
DB: HMMSmart
null null null 3.70e-18 srb:P148_SR1C001G0661
S1 (db=HMMPfam db_id=PF00575 from=285 to=358 evalue=5.4e-18 interpro_id=IPR003029 interpro_description=Ribosomal protein S1, RNA-binding domain GO=Molecular Function: RNA binding (GO:0003723)) iprscan interpro
DB: HMMPfam
null null null 5.40e-18 srb:P148_SR1C001G0661
no description (db=Gene3D db_id=G3DSA:2.40.50.140 from=201 to=274 evalue=3.6e-15 interpro_id=IPR012340 interpro_description=Nucleic acid-binding, OB-fold) iprscan interpro
DB: Gene3D
null null null 3.60e-15 srb:P148_SR1C001G0661
S1 (db=HMMPfam db_id=PF00575 from=203 to=272 evalue=4.0e-13 interpro_id=IPR003029 interpro_description=Ribosomal protein S1, RNA-binding domain GO=Molecular Function: RNA binding (GO:0003723)) iprscan interpro
DB: HMMPfam
null null null 4.00e-13 srb:P148_SR1C001G0661
TEX PROTEIN-RELATEDTRANSCRIPTION ACCESSORY PROTEIN (S1 RNA BINDING DOMAIN) (db=HMMPanther db_id=PTHR10724 from=200 to=324 evalue=1.4e-11) iprscan interpro
DB: HMMPanther
null null null 1.40e-11 srb:P148_SR1C001G0661
Nucleic acid-binding proteins (db=superfamily db_id=SSF50249 from=108 to=202 evalue=5.6e-11 interpro_id=IPR016027 interpro_description=Nucleic acid-binding, OB-fold-like) iprscan interpro
DB: superfamily
null null null 5.60e-11 srb:P148_SR1C001G0661
Nucleic acid-binding proteins (db=superfamily db_id=SSF50249 from=24 to=117 evalue=3.0e-07 interpro_id=IPR016027 interpro_description=Nucleic acid-binding, OB-fold-like) iprscan interpro
DB: superfamily
null null null 3.00e-07 srb:P148_SR1C001G0661
S1 (db=HMMPfam db_id=PF00575 from=23 to=93 evalue=8.9e-05 interpro_id=IPR003029 interpro_description=Ribosomal protein S1, RNA-binding domain GO=Molecular Function: RNA binding (GO:0003723)) iprscan interpro
DB: HMMPfam
null null null 8.90e-05 srb:P148_SR1C001G0661
no description (db=HMMSmart db_id=SM00316 from=24 to=93 evalue=0.23) iprscan interpro
DB: HMMSmart
null null null 2.30e-01 srb:P148_SR1C001G0661
no description (db=HMMSmart db_id=SM00316 from=109 to=189 evalue=2.5) iprscan interpro
DB: HMMSmart
null null null 2.50e+00 srb:P148_SR1C001G0661
S1 (db=ProfileScan db_id=PS50126 from=111 to=189 evalue=9.604 interpro_id=IPR003029 interpro_description=Ribosomal protein S1, RNA-binding domain GO=Molecular Function: RNA binding (GO:0003723)) iprscan interpro
DB: ProfileScan
null null null 9.60e+00 srb:P148_SR1C001G0661
S1 (db=ProfileScan db_id=PS50126 from=26 to=93 evalue=11.989 interpro_id=IPR003029 interpro_description=Ribosomal protein S1, RNA-binding domain GO=Molecular Function: RNA binding (GO:0003723)) iprscan interpro
DB: ProfileScan
null null null 1.20e+01 srb:P148_SR1C001G0661
S1 (db=ProfileScan db_id=PS50126 from=206 to=272 evalue=17.186 interpro_id=IPR003029 interpro_description=Ribosomal protein S1, RNA-binding domain GO=Molecular Function: RNA binding (GO:0003723)) iprscan interpro
DB: ProfileScan
null null null 1.72e+01 srb:P148_SR1C001G0661
S1 (db=ProfileScan db_id=PS50126 from=289 to=358 evalue=22.788 interpro_id=IPR003029 interpro_description=Ribosomal protein S1, RNA-binding domain GO=Molecular Function: RNA binding (GO:0003723)) iprscan interpro
DB: ProfileScan
null null null 2.28e+01 srb:P148_SR1C001G0661
RNA binding S1 domain protein n=1 Tax=candidate division TM7 single-cell isolate TM7c RepID=UPI00016B22D3 Tax=ACD2 UNIPROT
DB: UniProtKB
98.8 412.0 759 2.00e-216 ggdbv1_34587