Value | Algorithm | Source | Identity | Coverage | Bit score | Evalue | Cross references |
---|---|---|---|---|---|---|---|
RNA polymerase sigma factor n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=Q2RKT5_MOOTA (db=UNIREF evalue=2.0e-96 bit_score=356.0 identity=52.19 coverage=68.7116564417178) | similarity |
UNIREF
DB: UNIREF |
52.19 | 68.71 | 356 | 2.00e-96 | ccl:Clocl_2118 |
RNA polymerase, sigma 38 subunit, RpoS | rbh |
KEGG
DB: KEGG |
54.3 | 350.0 | 347 | 5.70e-93 | ccl:Clocl_2118 |
RNA polymerase, sigma 38 subunit, RpoS | rbh |
KEGG
DB: KEGG |
54.3 | 350.0 | 347 | 5.70e-93 | ccl:Clocl_2118 |
RNA polymerase, sigma 38 subunit, RpoS | similarity |
KEGG
DB: KEGG |
54.3 | 350.0 | 347 | 5.70e-93 | ccl:Clocl_2118 |
seg (db=Seg db_id=seg from=41 to=64) | iprscan |
interpro
DB: Seg |
null | null | null | null | ccl:Clocl_2118 |
seg (db=Seg db_id=seg from=17 to=32) | iprscan |
interpro
DB: Seg |
null | null | null | null | ccl:Clocl_2118 |
seg (db=Seg db_id=seg from=75 to=98) | iprscan |
interpro
DB: Seg |
null | null | null | null | ccl:Clocl_2118 |
SIGMA70_2 (db=PatternScan db_id=PS00716 from=449 to=475 evalue=0.0 interpro_id=IPR000943 interpro_description=RNA polymerase sigma-70 factor GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: PatternScan |
null | null | null | 0.0 | ccl:Clocl_2118 |
Sigma2 domain of RNA polymerase sigma factors (db=superfamily db_id=SSF88946 from=217 to=326 evalue=5.7e-45 interpro_id=IPR013325 interpro_description=RNA polymerase sigma factor, region 2 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: superfamily |
null | null | null | 5.61e-45 | ccl:Clocl_2118 |
no description (db=Gene3D db_id=G3DSA:1.10.601.10 from=48 to=325 evalue=8.3e-41) | iprscan |
interpro
DB: Gene3D |
null | null | null | 8.30e-41 | ccl:Clocl_2118 |
SIGMA70FCT (db=FPrintScan db_id=PR00046 from=280 to=293 evalue=2.6e-25 interpro_id=IPR000943 interpro_description=RNA polymerase sigma-70 factor GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: FPrintScan |
null | null | null | 2.60e-25 | ccl:Clocl_2118 |
SIGMA70FCT (db=FPrintScan db_id=PR00046 from=464 to=475 evalue=2.6e-25 interpro_id=IPR000943 interpro_description=RNA polymerase sigma-70 factor GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: FPrintScan |
null | null | null | 2.60e-25 | ccl:Clocl_2118 |
SIGMA70FCT (db=FPrintScan db_id=PR00046 from=428 to=440 evalue=2.6e-25 interpro_id=IPR000943 interpro_description=RNA polymerase sigma-70 factor GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: FPrintScan |
null | null | null | 2.60e-25 | ccl:Clocl_2118 |
SIGMA70FCT (db=FPrintScan db_id=PR00046 from=304 to=312 evalue=2.6e-25 interpro_id=IPR000943 interpro_description=RNA polymerase sigma-70 factor GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: FPrintScan |
null | null | null | 2.60e-25 | ccl:Clocl_2118 |
SIGMA70FCT (db=FPrintScan db_id=PR00046 from=449 to=464 evalue=2.6e-25 interpro_id=IPR000943 interpro_description=RNA polymerase sigma-70 factor GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: FPrintScan |
null | null | null | 2.60e-25 | ccl:Clocl_2118 |
Sigma3 and sigma4 domains of RNA polymerase sigma factors (db=superfamily db_id=SSF88659 from=386 to=488 evalue=6.4e-22 interpro_id=IPR013324 interpro_description=RNA polymerase sigma factor, region 3/4 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: superfamily |
null | null | null | 6.40e-22 | ccl:Clocl_2118 |
Sigma3 and sigma4 domains of RNA polymerase sigma factors (db=superfamily db_id=SSF88659 from=329 to=403 evalue=2.3e-21 interpro_id=IPR013324 interpro_description=RNA polymerase sigma factor, region 3/4 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: superfamily |
null | null | null | 2.30e-21 | ccl:Clocl_2118 |
Sigma70_r3 (db=HMMPfam db_id=PF04539 from=335 to=411 evalue=7.6e-20 interpro_id=IPR007624 interpro_description=RNA polymerase sigma-70 region 3 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: HMMPfam |
null | null | null | 7.60e-20 | ccl:Clocl_2118 |
no description (db=Gene3D db_id=G3DSA:1.10.10.10 from=410 to=488 evalue=9.3e-19 interpro_id=IPR011991 interpro_description=Winged helix-turn-helix transcription repressor DNA-binding) | iprscan |
interpro
DB: Gene3D |
null | null | null | 9.30e-19 | ccl:Clocl_2118 |
Sigma70_r2 (db=HMMPfam db_id=PF04542 from=256 to=326 evalue=4.3e-18 interpro_id=IPR007627 interpro_description=RNA polymerase sigma-70 region 2 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: HMMPfam |
null | null | null | 4.30e-18 | ccl:Clocl_2118 |
sigma70-ECF: RNA polymerase sigma factor, (db=HMMTigr db_id=TIGR02937 from=251 to=479 evalue=1.0e-16 interpro_id=IPR014284 interpro_description=RNA polymerase sigma-70 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: HMMTigr |
null | null | null | 1.00e-16 | ccl:Clocl_2118 |
Sigma70_r4 (db=HMMPfam db_id=PF04545 from=425 to=476 evalue=1.5e-16 interpro_id=IPR007630 interpro_description=RNA polymerase sigma-70 region 4 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: HMMPfam |
null | null | null | 1.50e-16 | ccl:Clocl_2118 |
no description (db=Gene3D db_id=G3DSA:1.10.10.10 from=329 to=380 evalue=3.2e-14 interpro_id=IPR011991 interpro_description=Winged helix-turn-helix transcription repressor DNA-binding) | iprscan |
interpro
DB: Gene3D |
null | null | null | 3.20e-14 | ccl:Clocl_2118 |
Sigma70_r1_2 (db=HMMPfam db_id=PF00140 from=217 to=253 evalue=7.6e-12 interpro_id=IPR009042 interpro_description=RNA polymerase sigma-70 region 1.2 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: HMMPfam |
null | null | null | 7.60e-12 | ccl:Clocl_2118 |
Sigma70_r1_1 (db=HMMPfam db_id=PF03979 from=147 to=209 evalue=4.6e-07 interpro_id=IPR007127 interpro_description=RNA polymerase sigma factor 70, region 1.1 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription regulator activity (GO:0030528), Biological Process: regulation of transcription (GO:0045449)) | iprscan |
interpro
DB: HMMPfam |
null | null | null | 4.60e-07 | ccl:Clocl_2118 |
mta:Moth_0624 RNA polymerase sigma factor RpoD; K03086 RNA polymerase primary sigma factor alias=ACD2_C00018G00015,ACD2_838.23489.59G0015,ACD2_838.23489.59_15 id=34611 tax=ACD2 species=Moorella thermoacetica genus=Moorella taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes organism_group=BD1-5 organism_desc=BD1-5 | similarity |
UNIREF
DB: UNIREF90 |
100.0 | null | 1006 | 3.40e-291 | ccl:Clocl_2118 |
mta:Moth_0624 RNA polymerase sigma factor RpoD; K03086 RNA polymerase primary sigma factor Tax=ACD2 |
UNIPROT
DB: UniProtKB |
98.2 | 489.0 | 878 | 3.60e-252 | ggdbv1_34611 |