Value | Algorithm | Source | Identity | Coverage | Bit score | Evalue | Cross references |
---|---|---|---|---|---|---|---|
DNA-directed RNA polymerase subunit beta' n=5 Tax=Dehalococcoides RepID=RPOC_DEHSC (db=UNIREF evalue=0.0 bit_score=1026.0 identity=42.5 coverage=94.0119760479042) | similarity |
UNIREF
DB: UNIREF |
42.5 | 94.01 | 1026 | 0.0 | det:DET0604 |
rpoC; DNA-directed RNA polymerase, beta' subunit (EC:2.7.7.6) | rbh |
KEGG
DB: KEGG |
43.3 | 999.99 | 991 | 2.70e-286 | det:DET0604 |
rpoC; DNA-directed RNA polymerase, beta' subunit (EC:2.7.7.6) | rbh |
KEGG
DB: KEGG |
43.3 | 999.99 | 991 | 2.70e-286 | det:DET0604 |
rpoC; DNA-directed RNA polymerase, beta' subunit (EC:2.7.7.6) | similarity |
KEGG
DB: KEGG |
43.3 | 999.99 | 991 | 2.70e-286 | det:DET0604 |
seg (db=Seg db_id=seg from=727 to=744) | iprscan |
interpro
DB: Seg |
null | null | null | null | det:DET0604 |
seg (db=Seg db_id=seg from=1309 to=1319) | iprscan |
interpro
DB: Seg |
null | null | null | null | det:DET0604 |
seg (db=Seg db_id=seg from=298 to=317) | iprscan |
interpro
DB: Seg |
null | null | null | null | det:DET0604 |
coiled-coil (db=Coil db_id=coil from=202 to=223 evalue=NA) | iprscan |
interpro
DB: Coil |
null | null | null | null | det:DET0604 |
beta and beta-prime subunits of DNA dependent RNA-polymerase (db=superfamily db_id=SSF64484 from=36 to=1292 evalue=0.0) | iprscan |
interpro
DB: superfamily |
null | null | null | 0.0 | det:DET0604 |
DNA-DIRECTED RNA POLYMERASE (db=HMMPanther db_id=PTHR19376 from=37 to=1291 evalue=0.0) | iprscan |
interpro
DB: HMMPanther |
null | null | null | 0.0 | det:DET0604 |
DNA-DIRECTED RNA POLYMERASE BETA CHAIN (db=HMMPanther db_id=PTHR19376:SF4 from=37 to=1291 evalue=0.0) | iprscan |
interpro
DB: HMMPanther |
null | null | null | 0.0 | det:DET0604 |
rpoC_TIGR: DNA-directed RNA polymerase, bet (db=HMMTigr db_id=TIGR02386 from=41 to=1298 evalue=0.0 interpro_id=IPR012754 interpro_description=DNA-directed RNA polymerase, subunit beta-prime GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: DNA-directed RNA polymerase activity (GO:0003899), Biological Process: transcription (GO:0006350)) | iprscan |
interpro
DB: HMMTigr |
null | null | null | 0.0 | det:DET0604 |
no description (db=HMMSmart db_id=SM00663 from=327 to=608 evalue=5.5e-146 interpro_id=IPR006592 interpro_description=RNA polymerase, N-terminal GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: DNA-directed RNA polymerase activity (GO:0003899), Biological Process: transcription (GO:0006350)) | iprscan |
interpro
DB: HMMSmart |
null | null | null | 5.50e-146 | det:DET0604 |
no description (db=Gene3D db_id=G3DSA:3.90.1120.10 from=35 to=439 evalue=2.2e-98 interpro_id=IPR007080 interpro_description=RNA polymerase Rpb1, domain 1 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: DNA-directed RNA polymerase activity (GO:0003899), Biological Process: transcription (GO:0006350)) | iprscan |
interpro
DB: Gene3D |
null | null | null | 2.20e-98 | det:DET0604 |
RNA_pol_Rpb1_1 (db=HMMPfam db_id=PF04997 from=42 to=436 evalue=2.9e-76 interpro_id=IPR007080 interpro_description=RNA polymerase Rpb1, domain 1 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: DNA-directed RNA polymerase activity (GO:0003899), Biological Process: transcription (GO:0006350)) | iprscan |
interpro
DB: HMMPfam |
null | null | null | 2.90e-76 | det:DET0604 |
RNA_pol_Rpb1_2 (db=HMMPfam db_id=PF00623 from=438 to=579 evalue=2.5e-46 interpro_id=IPR000722 interpro_description=RNA polymerase, alpha subunit GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: DNA-directed RNA polymerase activity (GO:0003899), Biological Process: transcription (GO:0006350)) | iprscan |
interpro
DB: HMMPfam |
null | null | null | 2.50e-46 | det:DET0604 |
RNA_pol_Rpb1_5 (db=HMMPfam db_id=PF04998 from=829 to=1253 evalue=5.0e-46 interpro_id=IPR007081 interpro_description=RNA polymerase Rpb1, domain 5 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: DNA-directed RNA polymerase activity (GO:0003899), Biological Process: transcription (GO:0006350)) | iprscan |
interpro
DB: HMMPfam |
null | null | null | 5.00e-46 | det:DET0604 |
no description (db=Gene3D db_id=G3DSA:2.40.40.30 from=440 to=582 evalue=5.2e-27 interpro_id=IPR000722 interpro_description=RNA polymerase, alpha subunit GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: DNA-directed RNA polymerase activity (GO:0003899), Biological Process: transcription (GO:0006350)) | iprscan |
interpro
DB: Gene3D |
null | null | null | 5.20e-27 | det:DET0604 |
RNA_pol_Rpb1_3 (db=HMMPfam db_id=PF04983 from=583 to=721 evalue=3.3e-20 interpro_id=IPR007066 interpro_description=RNA polymerase Rpb1, domain 3 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: DNA-directed RNA polymerase activity (GO:0003899), Biological Process: transcription (GO:0006350)) | iprscan |
interpro
DB: HMMPfam |
null | null | null | 3.30e-20 | det:DET0604 |
dev:DhcVS_544 rpoC; DNA-directed RNA polymerase beta subunit; K03046 DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] alias=ACD2_C00040G00006,ACD2_1456.17442.57G0006,ACD2_1456.17442.57_6 id=35273 tax=ACD2 species=unknown genus=Dehalococcoides taxon_order=unknown taxon_class=Dehalococcoidetes phylum=Chloroflexi organism_group=BD1-5 organism_desc=BD1-5 | similarity |
UNIREF
DB: UNIREF90 |
100.0 | null | 2696 | 0.0 | det:DET0604 |
dev:DhcVS_544 rpoC; DNA-directed RNA polymerase beta subunit; K03046 DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] Tax=ACD2 |
UNIPROT
DB: UniProtKB |
98.4 | 999.99 | 2442 | 0.0 | ggdbv1_35273 |