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ACD2_53_1 Annotations

Value Algorithm Source Identity Coverage Bit score Evalue Cross references
elf family DNA-directed RNA polymerase sigma subunit sigw similarity KEGG
DB: KEGG
33.7 172.0 96 1.20e-17 baco:OXB_1121
seg (db=Seg db_id=seg from=94 to=103) iprscan interpro
DB: Seg
null null null null baco:OXB_1121
sigma70-ECF: RNA polymerase sigma factor, (db=HMMTigr db_id=TIGR02937 from=19 to=169 evalue=3.4e-30 interpro_id=IPR014284 interpro_description=RNA polymerase sigma-70 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) iprscan interpro
DB: HMMTigr
null null null 3.40e-30 baco:OXB_1121
Sigma2 domain of RNA polymerase sigma factors (db=superfamily db_id=SSF88946 from=1 to=111 evalue=3.1e-16 interpro_id=IPR013325 interpro_description=RNA polymerase sigma factor, region 2 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) iprscan interpro
DB: superfamily
null null null 3.10e-16 baco:OXB_1121
Sigma70_r4_2 (db=HMMPfam db_id=PF08281 from=114 to=162 evalue=1.7e-15 interpro_id=IPR013249 interpro_description=RNA polymerase sigma factor 70, region 4 type 2 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) iprscan interpro
DB: HMMPfam
null null null 1.70e-15 baco:OXB_1121
no description (db=Gene3D db_id=G3DSA:1.10.1740.10 from=8 to=91 evalue=3.0e-15) iprscan interpro
DB: Gene3D
null null null 3.00e-15 baco:OXB_1121
Sigma3 and sigma4 domains of RNA polymerase sigma factors (db=superfamily db_id=SSF88659 from=107 to=171 evalue=9.1e-15 interpro_id=IPR013324 interpro_description=RNA polymerase sigma factor, region 3/4 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) iprscan interpro
DB: superfamily
null null null 9.10e-15 baco:OXB_1121
Sigma70_r2 (db=HMMPfam db_id=PF04542 from=24 to=91 evalue=1.7e-07 interpro_id=IPR007627 interpro_description=RNA polymerase sigma-70 region 2 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) iprscan interpro
DB: HMMPfam
null null null 1.70e-07 baco:OXB_1121
RNA polymerase sigma factor RpoE alias=ACD2_41111.1983.12G0001,ACD2_41111.1983.12_1,ACD2_C00053G00001 id=35360 tax=ACD2 species=Halorhodospira halophila genus=Halorhodospira taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria organism_group=BD1-5 organism_desc=BD1-5 similarity UNIREF
DB: UNIREF90
100.0 null 374 2.50e-101 baco:OXB_1121
RNA polymerase sigma factor RpoE Tax=ACD2 UNIPROT
DB: UniProtKB
99.5 188.0 366 2.30e-98 ggdbv1_35360