Value | Algorithm | Source | Identity | Coverage | Bit score | Evalue | Cross references |
---|---|---|---|---|---|---|---|
elf family DNA-directed RNA polymerase sigma subunit sigw | similarity |
KEGG
DB: KEGG |
33.7 | 172.0 | 96 | 1.20e-17 | baco:OXB_1121 |
seg (db=Seg db_id=seg from=94 to=103) | iprscan |
interpro
DB: Seg |
null | null | null | null | baco:OXB_1121 |
sigma70-ECF: RNA polymerase sigma factor, (db=HMMTigr db_id=TIGR02937 from=19 to=169 evalue=3.4e-30 interpro_id=IPR014284 interpro_description=RNA polymerase sigma-70 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: HMMTigr |
null | null | null | 3.40e-30 | baco:OXB_1121 |
Sigma2 domain of RNA polymerase sigma factors (db=superfamily db_id=SSF88946 from=1 to=111 evalue=3.1e-16 interpro_id=IPR013325 interpro_description=RNA polymerase sigma factor, region 2 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: superfamily |
null | null | null | 3.10e-16 | baco:OXB_1121 |
Sigma70_r4_2 (db=HMMPfam db_id=PF08281 from=114 to=162 evalue=1.7e-15 interpro_id=IPR013249 interpro_description=RNA polymerase sigma factor 70, region 4 type 2 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: HMMPfam |
null | null | null | 1.70e-15 | baco:OXB_1121 |
no description (db=Gene3D db_id=G3DSA:1.10.1740.10 from=8 to=91 evalue=3.0e-15) | iprscan |
interpro
DB: Gene3D |
null | null | null | 3.00e-15 | baco:OXB_1121 |
Sigma3 and sigma4 domains of RNA polymerase sigma factors (db=superfamily db_id=SSF88659 from=107 to=171 evalue=9.1e-15 interpro_id=IPR013324 interpro_description=RNA polymerase sigma factor, region 3/4 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: superfamily |
null | null | null | 9.10e-15 | baco:OXB_1121 |
Sigma70_r2 (db=HMMPfam db_id=PF04542 from=24 to=91 evalue=1.7e-07 interpro_id=IPR007627 interpro_description=RNA polymerase sigma-70 region 2 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: HMMPfam |
null | null | null | 1.70e-07 | baco:OXB_1121 |
RNA polymerase sigma factor RpoE alias=ACD2_41111.1983.12G0001,ACD2_41111.1983.12_1,ACD2_C00053G00001 id=35360 tax=ACD2 species=Halorhodospira halophila genus=Halorhodospira taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria organism_group=BD1-5 organism_desc=BD1-5 | similarity |
UNIREF
DB: UNIREF90 |
100.0 | null | 374 | 2.50e-101 | baco:OXB_1121 |
RNA polymerase sigma factor RpoE Tax=ACD2 |
UNIPROT
DB: UniProtKB |
99.5 | 188.0 | 366 | 2.30e-98 | ggdbv1_35360 |