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ACD2_57_5 Annotations

Value Algorithm Source Identity Coverage Bit score Evalue Cross references
ECF subfamily RNA polymerase sigma-24 subunit similarity KEGG
DB: KEGG
34.5 142.0 94 2.40e-17 nth:Nther_0132
Sigma-24, ECF subfamily protein n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6G350_9DELT (db=UNIREF evalue=1.0e-17 bit_score=92.4 identity=29.49 coverage=88.5714285714286) similarity UNIREF
DB: UNIREF
29.49 88.57 92 1.00e-17 nth:Nther_0132
seg (db=Seg db_id=seg from=162 to=174) iprscan interpro
DB: Seg
null null null null nth:Nther_0132
sigma70-ECF: RNA polymerase sigma factor, (db=HMMTigr db_id=TIGR02937 from=5 to=162 evalue=3.9e-25 interpro_id=IPR014284 interpro_description=RNA polymerase sigma-70 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:001698 iprscan interpro
DB: HMMTigr
null null null 3.90e-25 nth:Nther_0132
Sigma2 domain of RNA polymerase sigma factors (db=superfamily db_id=SSF88946 from=4 to=98 evalue=2.2e-16 interpro_id=IPR013325 interpro_description=RNA polymerase sigma factor, region 2 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor iprscan interpro
DB: superfamily
null null null 2.20e-16 nth:Nther_0132
(db=HMMPfam db_id=PF04542 from=10 to=76 evalue=6.4e-15 interpro_id=IPR007627 interpro_description=RNA polymerase sigma-70 region 2 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) iprscan interpro
DB: HMMPfam
null null null 6.40e-15 nth:Nther_0132
no description (db=Gene3D db_id=G3DSA:1.10.1740.10 from=4 to=76 evalue=7.6e-14) iprscan interpro
DB: Gene3D
null null null 7.60e-14 nth:Nther_0132
Sigma3 and sigma4 domains of RNA polymerase sigma factors (db=superfamily db_id=SSF88659 from=94 to=163 evalue=1.8e-08 interpro_id=IPR013324 interpro_description=RNA polymerase sigma factor, region 3/4 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Functi iprscan interpro
DB: superfamily
null null null 1.80e-08 nth:Nther_0132
Sigma-24, ECF subfamily protein n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6G350_9DELT Tax=ACD2 UNIPROT
DB: UniProtKB
97.7 175.0 317 8.60e-84 ggdbv1_35391