Value | Algorithm | Source | Identity | Coverage | Bit score | Evalue | Cross references |
---|---|---|---|---|---|---|---|
ECF subfamily RNA polymerase sigma-24 subunit | similarity |
KEGG
DB: KEGG |
34.5 | 142.0 | 94 | 2.40e-17 | nth:Nther_0132 |
Sigma-24, ECF subfamily protein n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6G350_9DELT (db=UNIREF evalue=1.0e-17 bit_score=92.4 identity=29.49 coverage=88.5714285714286) | similarity |
UNIREF
DB: UNIREF |
29.49 | 88.57 | 92 | 1.00e-17 | nth:Nther_0132 |
seg (db=Seg db_id=seg from=162 to=174) | iprscan |
interpro
DB: Seg |
null | null | null | null | nth:Nther_0132 |
sigma70-ECF: RNA polymerase sigma factor, (db=HMMTigr db_id=TIGR02937 from=5 to=162 evalue=3.9e-25 interpro_id=IPR014284 interpro_description=RNA polymerase sigma-70 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:001698 | iprscan |
interpro
DB: HMMTigr |
null | null | null | 3.90e-25 | nth:Nther_0132 |
Sigma2 domain of RNA polymerase sigma factors (db=superfamily db_id=SSF88946 from=4 to=98 evalue=2.2e-16 interpro_id=IPR013325 interpro_description=RNA polymerase sigma factor, region 2 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor | iprscan |
interpro
DB: superfamily |
null | null | null | 2.20e-16 | nth:Nther_0132 |
(db=HMMPfam db_id=PF04542 from=10 to=76 evalue=6.4e-15 interpro_id=IPR007627 interpro_description=RNA polymerase sigma-70 region 2 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: HMMPfam |
null | null | null | 6.40e-15 | nth:Nther_0132 |
no description (db=Gene3D db_id=G3DSA:1.10.1740.10 from=4 to=76 evalue=7.6e-14) | iprscan |
interpro
DB: Gene3D |
null | null | null | 7.60e-14 | nth:Nther_0132 |
Sigma3 and sigma4 domains of RNA polymerase sigma factors (db=superfamily db_id=SSF88659 from=94 to=163 evalue=1.8e-08 interpro_id=IPR013324 interpro_description=RNA polymerase sigma factor, region 3/4 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Functi | iprscan |
interpro
DB: superfamily |
null | null | null | 1.80e-08 | nth:Nther_0132 |
Sigma-24, ECF subfamily protein n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6G350_9DELT Tax=ACD2 |
UNIPROT
DB: UniProtKB |
97.7 | 175.0 | 317 | 8.60e-84 | ggdbv1_35391 |