ggKbase home page

SCNpilot_expt_300_bf_scaffold_2575_3

Organism: SCNPILOT_EXPT_300_BF_Afipia_64_5_fragment

partial RP 36 / 55 MC: 3 BSCG 39 / 51 MC: 4 ASCG 9 / 38
Location: comp(1642..2085)

Top 3 Functional Annotations

Value Algorithm Source
Putative PAS/PAC sensor protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V135_9BRAD similarity UNIREF
DB: UNIREF100
  • Identity: 74.1
  • Coverage: 147.0
  • Bit_score: 221
  • Evalue 5.20e-55
Putative PAS/PAC sensor protein {ECO:0000313|EMBL:EFI53415.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.; similarity UNIPROT
DB: UniProtKB
  • Identity: 74.1
  • Coverage: 147.0
  • Bit_score: 221
  • Evalue 7.20e-55
Pas/Pac domain protein similarity KEGG
DB: KEGG
  • Identity: 73.8
  • Coverage: 145.0
  • Bit_score: 218
  • Evalue 1.60e-54

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Afipia sp. 1NLS2 → Afipia → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 444
ATGGATTTTCGTGCAGCCGTCGGTGAAGCCATTCTCTCCGCCCAGTCCGATGCGATCGTCGCGACCGACAAGGCGGGCGTGATCACGTTCTGGAATCCGGGCGCGACGCGGATTTTCGGCTTCACGCTCGACGAGGCGATGGGAAAATCGCTCGACCTGATCATTCCGGAGAATCTGCGGGCGCGGCACTGGGAAGGCTACGACAAGGTGATGGAGACCGGCACGAGCCATTACACCACCGGCGACCTGCTGTCGGTGCCAGCCTTGACCAAGGCCGGCACGCGCATTTCGGTGCAGTTCACCATGGCGATCCTGTTCGACGAGGCCGGAAAGCCGGCCGGGTGCGCCTCGGTGATGCGCGACGTCACCAAGCAGTTCGAGGAGACCAAGGCGCTGCGCAAGAAGCTGGCGGCGGCCCAGCTCGCGGTCAGGGAAACCACCTGA
PROTEIN sequence
Length: 148
MDFRAAVGEAILSAQSDAIVATDKAGVITFWNPGATRIFGFTLDEAMGKSLDLIIPENLRARHWEGYDKVMETGTSHYTTGDLLSVPALTKAGTRISVQFTMAILFDEAGKPAGCASVMRDVTKQFEETKALRKKLAAAQLAVRETT*