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SCNpilot_expt_300_bf_scaffold_19634_2

Organism: SCNPILOT_EXPT_300_BF_Afipia_64_5_fragment

partial RP 36 / 55 MC: 3 BSCG 39 / 51 MC: 4 ASCG 9 / 38
Location: comp(505..1245)

Top 3 Functional Annotations

Value Algorithm Source
Regulatory protein IclR n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HRC4_PARL1 similarity UNIREF
DB: UNIREF100
  • Identity: 43.5
  • Coverage: 253.0
  • Bit_score: 188
  • Evalue 8.10e-45
Transcriptional regulator {ECO:0000313|EMBL:ETR78341.1}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 49.8
  • Coverage: 247.0
  • Bit_score: 238
  • Evalue 1.30e-59
DNA-binding transcriptional activator MhpR similarity KEGG
DB: KEGG
  • Identity: 43.5
  • Coverage: 253.0
  • Bit_score: 188
  • Evalue 2.30e-45

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Taxonomy

Afipia sp. P52-10 → Afipia → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 741
ATGGCCGGCACCGTCATCGAAGCCGTTCGCCGCAGCTTCGCCGTCCTGGAGGCGCTCGGCCGACGGCGCAACTCGACCGTCGCGGAGTTGACTCGTGAGACCGGATTGCCGCGGCCGACCCTCATCCGGCTGCTGCACACGTTGATCGCACTGGGCTACGCGCAGCGGATTTCGCGTCAGCTTGGCTATCGGCCGGCCGATCGCGTGCTGAACCTGGCCGGTGCCATCCGTTTCGTCGACCATCTCGTGGATGCGGCGATCCCGCATATGACGCGCTTCACGCGCGAGCACGGTTGGCCGCTCTACCTCGCCACGCTGAGCCATGGTTCCATCACCGTGCGCTACTCGACGGCGCCGGAGAGTCCCATGGCCTTCGAGGGCGCCGGCCTGAACGTGCCTCGGCCATTGCTGATCAGTGCGCTCGGCCGGGCGTTGATCGCCTTCTGCCCCGAGGAGGAGCGCCGGGCGACCCTGCGCGAGGCGATCAGCCTGTCGAGCCGCCAGCAGTCGGCCCTGGAAGCGGAGCTGGCGCGCATCCGCCGGGCCGGCTACGCCTTCACCGCTTCACCGCGACGGCCGCGCATCCATGGCATTGCCGTCCCCATCCGCCGCGGCCGGCGCGTGCTCGGCAGCCTCAGCATGCGCTTTCCTCGATCATCCATGACCGAAGAAGAGGTCGCCTCGCGCTATGGCCGGCGATTGCAGGCGCTGGCCCGCGCCATTGCTCGGGACACAGCCTAG
PROTEIN sequence
Length: 247
MAGTVIEAVRRSFAVLEALGRRRNSTVAELTRETGLPRPTLIRLLHTLIALGYAQRISRQLGYRPADRVLNLAGAIRFVDHLVDAAIPHMTRFTREHGWPLYLATLSHGSITVRYSTAPESPMAFEGAGLNVPRPLLISALGRALIAFCPEEERRATLREAISLSSRQQSALEAELARIRRAGYAFTASPRRPRIHGIAVPIRRGRRVLGSLSMRFPRSSMTEEEVASRYGRRLQALARAIARDTA*