ggKbase home page

You do not have permission to do that.

Please email help@ggkbase.berkeley.edu for help.

SCNpilot_expt_300_bf_scaffold_27436_1

Organism: SCNPILOT_EXPT_300_BF_Afipia_64_5_fragment

partial RP 36 / 55 MC: 3 BSCG 39 / 51 MC: 4 ASCG 9 / 38
Location: comp(2..469)

Top 3 Functional Annotations

Value Algorithm Source
Tetratricopeptide TPR_2 repeat protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6VA04_9BRAD similarity UNIREF
DB: UNIREF100
  • Identity: 68.1
  • Coverage: 144.0
  • Bit_score: 197
  • Evalue 8.40e-48
Cellulose synthase operon protein C {ECO:0000313|EMBL:CEG07762.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Ca similarity UNIPROT
DB: UniProtKB
  • Identity: 68.1
  • Coverage: 144.0
  • Bit_score: 197
  • Evalue 1.20e-47
hypothetical protein similarity KEGG
DB: KEGG
  • Identity: 44.1
  • Coverage: 136.0
  • Bit_score: 98
  • Evalue 1.50e-18

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Afipia felis → Afipia → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 468
ATGAGCAAATCTCCCTTCCCCGGCTCGACACAGGTCGATCCGCGAAACTTGGAAGCGATCTTTAATCAGGCGCTGGCAGCACATCGCGCAGGCCAGCTCGATCTCGCGGCCTCGCTCTATCGACAGATTCTGTCTCACAGCAAGAAGCAGTTCGCGCCCCGTCATTTGCTGGGCGTGATCGAGGGACAACGCGGCAATCTCGCCGAAGGCGTCCGACAGATCAGCAAGGCCATCAAGCTCGATCCCAATTCTGCGGACGCTTATCTCAATCTGGGGCGGATGCAGGGCGAGTTGGGCGAGCTGTCGAACGCGGAACGAAGTCTGCGCAAGGCTCTGGCGCTCAATCCGGCCAATCCACTGGCCGCCGGCAACCTCGCCGCGGTGCTGCGCCGTCTCGGACGCTTCGAGGAAGCACTCGCCTGCGTCGACGCGGTGCTGGCGCGCGAATCCAACAACGTAATCGCGATC
PROTEIN sequence
Length: 156
MSKSPFPGSTQVDPRNLEAIFNQALAAHRAGQLDLAASLYRQILSHSKKQFAPRHLLGVIEGQRGNLAEGVRQISKAIKLDPNSADAYLNLGRMQGELGELSNAERSLRKALALNPANPLAAGNLAAVLRRLGRFEEALACVDAVLARESNNVIAI