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ACD30_22_14 Annotations

Value Algorithm Source Identity Coverage Bit score Evalue Cross references
RpoD subfamily RNA polymerase sigma-70 subunit similarity KEGG
DB: KEGG
48.9 309.0 273 7.20e-71 cag:Cagg_0201
coiled-coil (db=Coil db_id=coil from=85 to=106 evalue=NA) iprscan interpro
DB: Coil
null null null null cag:Cagg_0201
SIGMA70_1 (db=PatternScan db_id=PS00715 from=123 to=136 evalue=0.0 interpro_id=IPR000943 interpro_description=RNA polymerase sigma-70 factor GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) iprscan interpro
DB: PatternScan
null null null 0.0 cag:Cagg_0201
Sigma2 domain of RNA polymerase sigma factors (db=superfamily db_id=SSF88946 from=32 to=169 evalue=4.7e-48 interpro_id=IPR013325 interpro_description=RNA polymerase sigma factor, region 2 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) iprscan interpro
DB: superfamily
null null null 4.70e-48 cag:Cagg_0201
no description (db=Gene3D db_id=G3DSA:1.10.601.10 from=47 to=168 evalue=3.7e-46) iprscan interpro
DB: Gene3D
null null null 3.70e-46 cag:Cagg_0201
sigma70-ECF: RNA polymerase sigma factor, (db=HMMTigr db_id=TIGR02937 from=94 to=322 evalue=3.2e-27 interpro_id=IPR014284 interpro_description=RNA polymerase sigma-70 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) iprscan interpro
DB: HMMTigr
null null null 3.20e-27 cag:Cagg_0201
SIGMA70FCT (db=FPrintScan db_id=PR00046 from=307 to=318 evalue=1.9e-26 interpro_id=IPR000943 interpro_description=RNA polymerase sigma-70 factor GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) iprscan interpro
DB: FPrintScan
null null null 1.90e-26 cag:Cagg_0201
SIGMA70FCT (db=FPrintScan db_id=PR00046 from=123 to=136 evalue=1.9e-26 interpro_id=IPR000943 interpro_description=RNA polymerase sigma-70 factor GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) iprscan interpro
DB: FPrintScan
null null null 1.90e-26 cag:Cagg_0201
SIGMA70FCT (db=FPrintScan db_id=PR00046 from=271 to=283 evalue=1.9e-26 interpro_id=IPR000943 interpro_description=RNA polymerase sigma-70 factor GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) iprscan interpro
DB: FPrintScan
null null null 1.90e-26 cag:Cagg_0201
SIGMA70FCT (db=FPrintScan db_id=PR00046 from=292 to=307 evalue=1.9e-26 interpro_id=IPR000943 interpro_description=RNA polymerase sigma-70 factor GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) iprscan interpro
DB: FPrintScan
null null null 1.90e-26 cag:Cagg_0201
SIGMA70FCT (db=FPrintScan db_id=PR00046 from=147 to=155 evalue=1.9e-26 interpro_id=IPR000943 interpro_description=RNA polymerase sigma-70 factor GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) iprscan interpro
DB: FPrintScan
null null null 1.90e-26 cag:Cagg_0201
Sigma3 and sigma4 domains of RNA polymerase sigma factors (db=superfamily db_id=SSF88659 from=229 to=324 evalue=1.5e-22 interpro_id=IPR013324 interpro_description=RNA polymerase sigma factor, region 3/4 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) iprscan interpro
DB: superfamily
null null null 1.50e-22 cag:Cagg_0201
Sigma70_r2 (db=HMMPfam db_id=PF04542 from=99 to=166 evalue=9.0e-20 interpro_id=IPR007627 interpro_description=RNA polymerase sigma-70 region 2 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) iprscan interpro
DB: HMMPfam
null null null 9.00e-20 cag:Cagg_0201
no description (db=Gene3D db_id=G3DSA:1.10.10.10 from=253 to=320 evalue=4.7e-17 interpro_id=IPR011991 interpro_description=Winged helix-turn-helix transcription repressor DNA-binding) iprscan interpro
DB: Gene3D
null null null 4.70e-17 cag:Cagg_0201
Sigma70_r4 (db=HMMPfam db_id=PF04545 from=268 to=316 evalue=1.4e-16 interpro_id=IPR007630 interpro_description=RNA polymerase sigma-70 region 4 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) iprscan interpro
DB: HMMPfam
null null null 1.40e-16 cag:Cagg_0201
Sigma70_r1_2 (db=HMMPfam db_id=PF00140 from=38 to=66 evalue=1.8e-13 interpro_id=IPR009042 interpro_description=RNA polymerase sigma-70 region 1.2 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) iprscan interpro
DB: HMMPfam
null null null 1.80e-13 cag:Cagg_0201
Sigma3 and sigma4 domains of RNA polymerase sigma factors (db=superfamily db_id=SSF88659 from=172 to=246 evalue=6.7e-11 interpro_id=IPR013324 interpro_description=RNA polymerase sigma factor, region 3/4 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) iprscan interpro
DB: superfamily
null null null 6.70e-11 cag:Cagg_0201
no description (db=Gene3D db_id=G3DSA:1.10.10.10 from=172 to=223 evalue=2.1e-06 interpro_id=IPR011991 interpro_description=Winged helix-turn-helix transcription repressor DNA-binding) iprscan interpro
DB: Gene3D
null null null 2.10e-06 cag:Cagg_0201
RNA polymerase, sigma 70 subunit, RpoD subfamily; K03086 RNA polymerase primary sigma factor alias=ACD30_C00022G00014,ACD30_22816.15472.9G0014,ACD30_22816.15472.9_14 id=36295 tax=ACD30 species=Frankia sp. EuI1c genus=Frankia taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria organism_group=OP11 organism_desc=OP11 similarity UNIREF
DB: UNIREF90
100.0 null 644 2.20e-182 cag:Cagg_0201
RpoD subfamily RNA polymerase sigma-70 subunit; K03086 RNA polymerase primary sigma factor Tax=RIFCSPHIGHO2_12_FULL_OP11_Daviesbacteria_37_16_curated UNIPROT
DB: UniProtKB
100.0 327.0 644 7.70e-182 ggdbv1_88104624