Value | Algorithm | Source | Identity | Coverage | Bit score | Evalue | Cross references |
---|---|---|---|---|---|---|---|
polynucleotide phosphorylase/polyadenylase (EC:2.7.7.8) | rbh |
KEGG
DB: KEGG |
44.3 | 740.0 | 604 | 4.00e-170 | rrs:RoseRS_0949 |
polynucleotide phosphorylase/polyadenylase (EC:2.7.7.8) | similarity |
KEGG
DB: KEGG |
44.3 | 740.0 | 604 | 4.00e-170 | rrs:RoseRS_0949 |
Polyribonucleotide nucleotidyltransferase n=5 Tax=Veillonella RepID=D1BM43_VEIPT (db=UNIREF evalue=2.0e-156 bit_score=556.0 identity=45.66 coverage=91.745602165088) | similarity |
UNIREF
DB: UNIREF |
45.66 | 91.75 | 556 | 2.00e-156 | rrs:RoseRS_0949 |
seg (db=Seg db_id=seg from=436 to=453) | iprscan |
interpro
DB: Seg |
null | null | null | null | rrs:RoseRS_0949 |
seg (db=Seg db_id=seg from=246 to=258) | iprscan |
interpro
DB: Seg |
null | null | null | null | rrs:RoseRS_0949 |
seg (db=Seg db_id=seg from=701 to=739) | iprscan |
interpro
DB: Seg |
null | null | null | null | rrs:RoseRS_0949 |
polynuc_phos: polyribonucleotide nucleot (db=HMMTigr db_id=TIGR03591 from=10 to=690 evalue=7.3e-278 interpro_id=IPR012162 interpro_description=Polyribonucleotide nucleotidyltransferase GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: polyribonucleotide nucleotidyltransferase activity (GO:0004654), Cellular Component: mitochondrion (GO:0005739), Biological Process: mRNA catabolic process (GO:0006402)) | iprscan |
interpro
DB: HMMTigr |
null | null | null | 7.30e-278 | rrs:RoseRS_0949 |
POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE (db=HMMPanther db_id=PTHR11252 from=145 to=717 evalue=3.0e-173 interpro_id=IPR012162 interpro_description=Polyribonucleotide nucleotidyltransferase GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: polyribonucleotide nucleotidyltransferase activity (GO:0004654), Cellular Component: mitochondrion (GO:0005739), Biological Process: mRNA catabolic process (GO:0006402)) | iprscan |
interpro
DB: HMMPanther |
null | null | null | 3.00e-173 | rrs:RoseRS_0949 |
Ribosomal protein S5 domain 2-like (db=superfamily db_id=SSF54211 from=1 to=144 evalue=3.9e-40 interpro_id=IPR020568 interpro_description=Ribosomal protein S5 domain 2-type fold) | iprscan |
interpro
DB: superfamily |
null | null | null | 3.90e-40 | rrs:RoseRS_0949 |
Ribosomal protein S5 domain 2-like (db=superfamily db_id=SSF54211 from=322 to=460 evalue=1.2e-35 interpro_id=IPR020568 interpro_description=Ribosomal protein S5 domain 2-type fold) | iprscan |
interpro
DB: superfamily |
null | null | null | 1.20e-35 | rrs:RoseRS_0949 |
no description (db=HMMSmart db_id=SM00316 from=620 to=690 evalue=3.7e-24) | iprscan |
interpro
DB: HMMSmart |
null | null | null | 3.70e-24 | rrs:RoseRS_0949 |
Ribonuclease PH domain 2-like (db=superfamily db_id=SSF55666 from=452 to=551 evalue=5.8e-23 interpro_id=IPR015847 interpro_description=Exoribonuclease, phosphorolytic domain 2 GO=Molecular Function: 3'-5'-exoribonuclease activity (GO:0000175), Molecular Function: RNA binding (GO:0003723), Biological Process: RNA processing (GO:0006396)) | iprscan |
interpro
DB: superfamily |
null | null | null | 5.80e-23 | rrs:RoseRS_0949 |
Eukaryotic type KH-domain (KH-domain type I) (db=superfamily db_id=SSF54791 from=540 to=636 evalue=1.7e-21) | iprscan |
interpro
DB: superfamily |
null | null | null | 1.70e-21 | rrs:RoseRS_0949 |
Nucleic acid-binding proteins (db=superfamily db_id=SSF50249 from=619 to=689 evalue=2.4e-20 interpro_id=IPR016027 interpro_description=Nucleic acid-binding, OB-fold-like) | iprscan |
interpro
DB: superfamily |
null | null | null | 2.40e-20 | rrs:RoseRS_0949 |
no description (db=Gene3D db_id=G3DSA:2.40.50.140 from=617 to=690 evalue=7.1e-19 interpro_id=IPR012340 interpro_description=Nucleic acid-binding, OB-fold) | iprscan |
interpro
DB: Gene3D |
null | null | null | 7.10e-19 | rrs:RoseRS_0949 |
Ribonuclease PH domain 2-like (db=superfamily db_id=SSF55666 from=145 to=238 evalue=1.2e-18 interpro_id=IPR015847 interpro_description=Exoribonuclease, phosphorolytic domain 2 GO=Molecular Function: 3'-5'-exoribonuclease activity (GO:0000175), Molecular Function: RNA binding (GO:0003723), Biological Process: RNA processing (GO:0006396)) | iprscan |
interpro
DB: superfamily |
null | null | null | 1.20e-18 | rrs:RoseRS_0949 |
S1 (db=HMMPfam db_id=PF00575 from=619 to=689 evalue=3.9e-18 interpro_id=IPR003029 interpro_description=Ribosomal protein S1, RNA-binding domain GO=Molecular Function: RNA binding (GO:0003723)) | iprscan |
interpro
DB: HMMPfam |
null | null | null | 3.90e-18 | rrs:RoseRS_0949 |
RNase_PH (db=HMMPfam db_id=PF01138 from=323 to=458 evalue=8.9e-18 interpro_id=IPR001247 interpro_description=Exoribonuclease, phosphorolytic domain 1 GO=Molecular Function: 3'-5'-exoribonuclease activity (GO:0000175), Molecular Function: RNA binding (GO:0003723), Biological Process: RNA processing (GO:0006396)) | iprscan |
interpro
DB: HMMPfam |
null | null | null | 8.90e-18 | rrs:RoseRS_0949 |
RNase_PH (db=HMMPfam db_id=PF01138 from=15 to=144 evalue=4.4e-15 interpro_id=IPR001247 interpro_description=Exoribonuclease, phosphorolytic domain 1 GO=Molecular Function: 3'-5'-exoribonuclease activity (GO:0000175), Molecular Function: RNA binding (GO:0003723), Biological Process: RNA processing (GO:0006396)) | iprscan |
interpro
DB: HMMPfam |
null | null | null | 4.40e-15 | rrs:RoseRS_0949 |
KH_1 (db=HMMPfam db_id=PF00013 from=559 to=611 evalue=8.0e-11 interpro_id=IPR018111 interpro_description=K Homology, type 1, subgroup GO=Molecular Function: RNA binding (GO:0003723)) | iprscan |
interpro
DB: HMMPfam |
null | null | null | 8.00e-11 | rrs:RoseRS_0949 |
no description (db=HMMSmart db_id=SM00322 from=552 to=617 evalue=3.0e-10 interpro_id=IPR004087 interpro_description=K Homology GO=Molecular Function: RNA binding (GO:0003723)) | iprscan |
interpro
DB: HMMSmart |
null | null | null | 3.00e-10 | rrs:RoseRS_0949 |
Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 (db=superfamily db_id=SSF46915 from=226 to=326 evalue=2.4e-09 interpro_id=IPR015848 interpro_description=Polynucleotide phosphorylase, phosphorolytic RNA-binding, bacterial/organelle-type GO=Molecular Function: 3'-5'-exoribonuclease activity (GO:0000175), Molecular Function: RNA binding (GO:0003723), Biological Process: RNA processing (GO:0006396)) | iprscan |
interpro
DB: superfamily |
null | null | null | 2.40e-09 | rrs:RoseRS_0949 |
RNase_PH_C (db=HMMPfam db_id=PF03725 from=147 to=210 evalue=4.6e-06 interpro_id=IPR015847 interpro_description=Exoribonuclease, phosphorolytic domain 2 GO=Molecular Function: 3'-5'-exoribonuclease activity (GO:0000175), Molecular Function: RNA binding (GO:0003723), Biological Process: RNA processing (GO:0006396)) | iprscan |
interpro
DB: HMMPfam |
null | null | null | 4.60e-06 | rrs:RoseRS_0949 |
PNPase (db=HMMPfam db_id=PF03726 from=245 to=319 evalue=7.0e-06 interpro_id=IPR015848 interpro_description=Polynucleotide phosphorylase, phosphorolytic RNA-binding, bacterial/organelle-type GO=Molecular Function: 3'-5'-exoribonuclease activity (GO:0000175), Molecular Function: RNA binding (GO:0003723), Biological Process: RNA processing (GO:0006396)) | iprscan |
interpro
DB: HMMPfam |
null | null | null | 7.00e-06 | rrs:RoseRS_0949 |
RNase_PH_C (db=HMMPfam db_id=PF03725 from=461 to=528 evalue=3.2e-05 interpro_id=IPR015847 interpro_description=Exoribonuclease, phosphorolytic domain 2 GO=Molecular Function: 3'-5'-exoribonuclease activity (GO:0000175), Molecular Function: RNA binding (GO:0003723), Biological Process: RNA processing (GO:0006396)) | iprscan |
interpro
DB: HMMPfam |
null | null | null | 3.20e-05 | rrs:RoseRS_0949 |
KH_TYPE_1 (db=ProfileScan db_id=PS50084 from=560 to=612 evalue=11.783 interpro_id=IPR004088 interpro_description=K Homology, type 1 GO=Molecular Function: RNA binding (GO:0003723)) | iprscan |
interpro
DB: ProfileScan |
null | null | null | 1.18e+01 | rrs:RoseRS_0949 |
S1 (db=ProfileScan db_id=PS50126 from=622 to=690 evalue=19.639 interpro_id=IPR003029 interpro_description=Ribosomal protein S1, RNA-binding domain GO=Molecular Function: RNA binding (GO:0003723)) | iprscan |
interpro
DB: ProfileScan |
null | null | null | 1.96e+01 | rrs:RoseRS_0949 |
PNPase (db=HAMAP db_id=MF_01595 from=3 to=693 evalue=24.52 interpro_id=IPR012162 interpro_description=Polyribonucleotide nucleotidyltransferase GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: polyribonucleotide nucleotidyltransferase activity (GO:0004654), Cellular Component: mitochondrion (GO:0005739), Biological Process: mRNA catabolic process (GO:0006402)) | iprscan |
interpro
DB: HAMAP |
null | null | null | 2.45e+01 | rrs:RoseRS_0949 |
tro:trd_0623 polynucleotide phosphorylase/polyadenylase (EC:2.7.7.8); K00962 polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] alias=ACD30_47548.2363.9G0002,ACD30_47548.2363.9_2,ACD30_C00040G00002 id=36441 tax=ACD30 species=unknown genus=Veillonella taxon_order=Selenomonadales taxon_class=Negativicutes phylum=Firmicutes organism_group=OP11 organism_desc=OP11 | similarity |
UNIREF
DB: UNIREF90 |
100.0 | null | 1434 | 0.0 | rrs:RoseRS_0949 |
Polyribonucleotide nucleotidyltransferase {ECO:0000313|EMBL:KKQ16336.1}; TaxID=1618417 species="Bacteria; Microgenomates.;" source="Microgenomates (Daviesbacteria) bacterium GW2011_GWA1_36_8.;" |
UNIPROT
DB: UniProtKB |
100.0 | 739.0 | 1434 | 0.0 | A0A0G0IJY2_9BACT |