ggKbase | annotations

Value	Algorithm	Source	Identity	Coverage	Bit score	Evalue	Cross references
RNA polymerase sigma A factor	similarity	KEGG DB: KEGG	50.5	313.0	303	6.50e-80	fma:FMG_0823
seg (db=Seg db_id=seg from=68 to=79)	iprscan	interpro DB: Seg	null	null	null	null	fma:FMG_0823
seg (db=Seg db_id=seg from=308 to=323)	iprscan	interpro DB: Seg	null	null	null	null	fma:FMG_0823
SIGMA70_1 (db=PatternScan db_id=PS00715 from=112 to=125 evalue=0.0 interpro_id=IPR000943 interpro_description=RNA polymerase sigma-70 factor GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987))	iprscan	interpro DB: PatternScan	null	null	null	0.0	fma:FMG_0823
SIGMA70_2 (db=PatternScan db_id=PS00716 from=283 to=309 evalue=0.0 interpro_id=IPR000943 interpro_description=RNA polymerase sigma-70 factor GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987))	iprscan	interpro DB: PatternScan	null	null	null	0.0	fma:FMG_0823
Sigma2 domain of RNA polymerase sigma factors (db=superfamily db_id=SSF88946 from=48 to=158 evalue=9.3e-51 interpro_id=IPR013325 interpro_description=RNA polymerase sigma factor, region 2 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma fact	iprscan	interpro DB: superfamily	null	null	null	9.30e-51	fma:FMG_0823
no description (db=Gene3D db_id=G3DSA:1.10.601.10 from=63 to=157 evalue=1.5e-48)	iprscan	interpro DB: Gene3D	null	null	null	1.50e-48	fma:FMG_0823
sigma70-ECF: RNA polymerase sigma factor, (db=HMMTigr db_id=TIGR02937 from=83 to=313 evalue=1.2e-31 interpro_id=IPR014284 interpro_description=RNA polymerase sigma-70 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:00169	iprscan	interpro DB: HMMTigr	null	null	null	1.20e-31	fma:FMG_0823
SIGMA70FCT (db=FPrintScan db_id=PR00046 from=283 to=298 evalue=5.1e-28 interpro_id=IPR000943 interpro_description=RNA polymerase sigma-70 factor GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987))	iprscan	interpro DB: FPrintScan	null	null	null	5.10e-28	fma:FMG_0823
SIGMA70FCT (db=FPrintScan db_id=PR00046 from=112 to=125 evalue=5.1e-28 interpro_id=IPR000943 interpro_description=RNA polymerase sigma-70 factor GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987))	iprscan	interpro DB: FPrintScan	null	null	null	5.10e-28	fma:FMG_0823
SIGMA70FCT (db=FPrintScan db_id=PR00046 from=298 to=309 evalue=5.1e-28 interpro_id=IPR000943 interpro_description=RNA polymerase sigma-70 factor GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987))	iprscan	interpro DB: FPrintScan	null	null	null	5.10e-28	fma:FMG_0823
SIGMA70FCT (db=FPrintScan db_id=PR00046 from=136 to=144 evalue=5.1e-28 interpro_id=IPR000943 interpro_description=RNA polymerase sigma-70 factor GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987))	iprscan	interpro DB: FPrintScan	null	null	null	5.10e-28	fma:FMG_0823
SIGMA70FCT (db=FPrintScan db_id=PR00046 from=261 to=273 evalue=5.1e-28 interpro_id=IPR000943 interpro_description=RNA polymerase sigma-70 factor GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987))	iprscan	interpro DB: FPrintScan	null	null	null	5.10e-28	fma:FMG_0823
Sigma3 and sigma4 domains of RNA polymerase sigma factors (db=superfamily db_id=SSF88659 from=219 to=324 evalue=2.6e-24 interpro_id=IPR013324 interpro_description=RNA polymerase sigma factor, region 3/4 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Funct	iprscan	interpro DB: superfamily	null	null	null	2.60e-24	fma:FMG_0823
(db=HMMPfam db_id=PF04542 from=88 to=157 evalue=1.1e-22 interpro_id=IPR007627 interpro_description=RNA polymerase sigma-70 region 2 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987))	iprscan	interpro DB: HMMPfam	null	null	null	1.10e-22	fma:FMG_0823
(db=HMMPfam db_id=PF04545 from=258 to=311 evalue=6.3e-21 interpro_id=IPR007630 interpro_description=RNA polymerase sigma-70 region 4 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987))	iprscan	interpro DB: HMMPfam	null	null	null	6.30e-21	fma:FMG_0823
no description (db=Gene3D db_id=G3DSA:1.10.10.10 from=243 to=322 evalue=1.2e-18 interpro_id=IPR011991 interpro_description=Winged helix-turn-helix transcription repressor DNA-binding)	iprscan	interpro DB: Gene3D	null	null	null	1.20e-18	fma:FMG_0823
Sigma3 and sigma4 domains of RNA polymerase sigma factors (db=superfamily db_id=SSF88659 from=161 to=236 evalue=2.3e-17 interpro_id=IPR013324 interpro_description=RNA polymerase sigma factor, region 3/4 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Funct	iprscan	interpro DB: superfamily	null	null	null	2.30e-17	fma:FMG_0823
(db=HMMPfam db_id=PF04539 from=167 to=243 evalue=5.7e-16 interpro_id=IPR007624 interpro_description=RNA polymerase sigma-70 region 3 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987))	iprscan	interpro DB: HMMPfam	null	null	null	5.70e-16	fma:FMG_0823
(db=HMMPfam db_id=PF00140 from=48 to=78 evalue=2.1e-11 interpro_id=IPR009042 interpro_description=RNA polymerase sigma-70 region 1.2 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987))	iprscan	interpro DB: HMMPfam	null	null	null	2.10e-11	fma:FMG_0823
no description (db=Gene3D db_id=G3DSA:1.10.10.10 from=161 to=212 evalue=1.7e-10 interpro_id=IPR011991 interpro_description=Winged helix-turn-helix transcription repressor DNA-binding)	iprscan	interpro DB: Gene3D	null	null	null	1.70e-10	fma:FMG_0823
RNA polymerase sigma factor {ECO:0000256\|RuleBase:RU000715}; TaxID=1262794 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clost		UNIPROT DB: UniProtKB	70.1	328.0	463	3.20e-127	R6QFJ8_9CLOT
RNA polymerase sigma factor RpoD (Sigma-70); K03086 RNA polymerase primary sigma factor alias=MEL_C1_C00001G00263 id=162113 tax=MEL_C1 species=Treponema azotonutricium genus=Treponema taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes	similarity	UNIREF DB: UNIREF90	69.1	null	441	2.90e-121	fma:FMG_0823

RNA polymerase sigma A factor

similarity

KEGG
DB: KEGG

50.5

313.0

303

6.50e-80

fma:FMG_0823

seg (db=Seg db_id=seg from=68 to=79)

iprscan

interpro
DB: Seg

null

fma:FMG_0823

seg (db=Seg db_id=seg from=308 to=323)

iprscan

interpro
DB: Seg

null

fma:FMG_0823

SIGMA70_1 (db=PatternScan db_id=PS00715 from=112 to=125 evalue=0.0 interpro_id=IPR000943 interpro_description=RNA polymerase sigma-70 factor GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987))

iprscan

interpro
DB: PatternScan

null

0.0

fma:FMG_0823

SIGMA70_2 (db=PatternScan db_id=PS00716 from=283 to=309 evalue=0.0 interpro_id=IPR000943 interpro_description=RNA polymerase sigma-70 factor GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987))

iprscan

interpro
DB: PatternScan

null

0.0

fma:FMG_0823

Sigma2 domain of RNA polymerase sigma factors (db=superfamily db_id=SSF88946 from=48 to=158 evalue=9.3e-51 interpro_id=IPR013325 interpro_description=RNA polymerase sigma factor, region 2 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma fact

iprscan

interpro
DB: superfamily

null

9.30e-51

fma:FMG_0823

no description (db=Gene3D db_id=G3DSA:1.10.601.10 from=63 to=157 evalue=1.5e-48)

iprscan

interpro
DB: Gene3D

null

1.50e-48

fma:FMG_0823

sigma70-ECF: RNA polymerase sigma factor, (db=HMMTigr db_id=TIGR02937 from=83 to=313 evalue=1.2e-31 interpro_id=IPR014284 interpro_description=RNA polymerase sigma-70 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:00169

iprscan

interpro
DB: HMMTigr

null

1.20e-31

fma:FMG_0823

SIGMA70FCT (db=FPrintScan db_id=PR00046 from=283 to=298 evalue=5.1e-28 interpro_id=IPR000943 interpro_description=RNA polymerase sigma-70 factor GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987))

iprscan

interpro
DB: FPrintScan

null

5.10e-28

fma:FMG_0823

SIGMA70FCT (db=FPrintScan db_id=PR00046 from=112 to=125 evalue=5.1e-28 interpro_id=IPR000943 interpro_description=RNA polymerase sigma-70 factor GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987))

iprscan

interpro
DB: FPrintScan

null

5.10e-28

fma:FMG_0823

SIGMA70FCT (db=FPrintScan db_id=PR00046 from=298 to=309 evalue=5.1e-28 interpro_id=IPR000943 interpro_description=RNA polymerase sigma-70 factor GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987))

iprscan

interpro
DB: FPrintScan

null

5.10e-28

fma:FMG_0823

SIGMA70FCT (db=FPrintScan db_id=PR00046 from=136 to=144 evalue=5.1e-28 interpro_id=IPR000943 interpro_description=RNA polymerase sigma-70 factor GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987))

iprscan

interpro
DB: FPrintScan

null

5.10e-28

fma:FMG_0823

SIGMA70FCT (db=FPrintScan db_id=PR00046 from=261 to=273 evalue=5.1e-28 interpro_id=IPR000943 interpro_description=RNA polymerase sigma-70 factor GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987))

iprscan

interpro
DB: FPrintScan

null

5.10e-28

fma:FMG_0823

Sigma3 and sigma4 domains of RNA polymerase sigma factors (db=superfamily db_id=SSF88659 from=219 to=324 evalue=2.6e-24 interpro_id=IPR013324 interpro_description=RNA polymerase sigma factor, region 3/4 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Funct

iprscan

interpro
DB: superfamily

null

2.60e-24

fma:FMG_0823

(db=HMMPfam db_id=PF04542 from=88 to=157 evalue=1.1e-22 interpro_id=IPR007627 interpro_description=RNA polymerase sigma-70 region 2 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987))

iprscan

interpro
DB: HMMPfam

null

1.10e-22

fma:FMG_0823

(db=HMMPfam db_id=PF04545 from=258 to=311 evalue=6.3e-21 interpro_id=IPR007630 interpro_description=RNA polymerase sigma-70 region 4 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987))

iprscan

interpro
DB: HMMPfam

null

6.30e-21

fma:FMG_0823

no description (db=Gene3D db_id=G3DSA:1.10.10.10 from=243 to=322 evalue=1.2e-18 interpro_id=IPR011991 interpro_description=Winged helix-turn-helix transcription repressor DNA-binding)

iprscan

interpro
DB: Gene3D

null

1.20e-18

fma:FMG_0823

Sigma3 and sigma4 domains of RNA polymerase sigma factors (db=superfamily db_id=SSF88659 from=161 to=236 evalue=2.3e-17 interpro_id=IPR013324 interpro_description=RNA polymerase sigma factor, region 3/4 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Funct

iprscan

interpro
DB: superfamily

null

2.30e-17

fma:FMG_0823

(db=HMMPfam db_id=PF04539 from=167 to=243 evalue=5.7e-16 interpro_id=IPR007624 interpro_description=RNA polymerase sigma-70 region 3 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987))

iprscan

interpro
DB: HMMPfam

null

5.70e-16

fma:FMG_0823

(db=HMMPfam db_id=PF00140 from=48 to=78 evalue=2.1e-11 interpro_id=IPR009042 interpro_description=RNA polymerase sigma-70 region 1.2 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987))

iprscan

interpro
DB: HMMPfam

null

2.10e-11

fma:FMG_0823

no description (db=Gene3D db_id=G3DSA:1.10.10.10 from=161 to=212 evalue=1.7e-10 interpro_id=IPR011991 interpro_description=Winged helix-turn-helix transcription repressor DNA-binding)

iprscan

interpro
DB: Gene3D

null

1.70e-10

fma:FMG_0823

RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000715}; TaxID=1262794 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clost

UNIPROT
DB: UniProtKB

70.1

328.0

463

3.20e-127

R6QFJ8_9CLOT

RNA polymerase sigma factor RpoD (Sigma-70); K03086 RNA polymerase primary sigma factor alias=MEL_C1_C00001G00263 id=162113 tax=MEL_C1 species=Treponema azotonutricium genus=Treponema taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes

similarity

UNIREF
DB: UNIREF90

69.1

null

441

2.90e-121

fma:FMG_0823

MEL_C3_28_2 Annotations

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