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MEL_C3_53_1 Annotations

Value Algorithm Source Identity Coverage Bit score Evalue Cross references
RNA polymerase sigma factor, sigma-70 family similarity KEGG
DB: KEGG
42.6 204.0 149 7.50e-34 cmp:Cha6605_0084
sigma70-ECF: RNA polymerase sigma factor, (db=HMMTigr db_id=TIGR02937 from=24 to=199 evalue=1.1e-38 interpro_id=IPR014284 interpro_description=RNA polymerase sigma-70 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:00169 iprscan interpro
DB: HMMTigr
null null null 1.10e-38 cmp:Cha6605_0084
Sigma3 and sigma4 domains of RNA polymerase sigma factors (db=superfamily db_id=SSF88659 from=131 to=201 evalue=6.4e-17 interpro_id=IPR013324 interpro_description=RNA polymerase sigma factor, region 3/4 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Funct iprscan interpro
DB: superfamily
null null null 6.40e-17 cmp:Cha6605_0084
Sigma2 domain of RNA polymerase sigma factors (db=superfamily db_id=SSF88946 from=3 to=116 evalue=8.3e-17 interpro_id=IPR013325 interpro_description=RNA polymerase sigma factor, region 2 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma facto iprscan interpro
DB: superfamily
null null null 8.30e-17 cmp:Cha6605_0084
(db=HMMPfam db_id=PF08281 from=145 to=195 evalue=2.1e-16 interpro_id=IPR013249 interpro_description=RNA polymerase sigma factor 70, region 4 type 2 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) iprscan interpro
DB: HMMPfam
null null null 2.10e-16 cmp:Cha6605_0084
no description (db=Gene3D db_id=G3DSA:1.10.1740.10 from=13 to=99 evalue=1.3e-15) iprscan interpro
DB: Gene3D
null null null 1.30e-15 cmp:Cha6605_0084
(db=HMMPfam db_id=PF04542 from=29 to=96 evalue=1.8e-08 interpro_id=IPR007627 interpro_description=RNA polymerase sigma-70 region 2 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) iprscan interpro
DB: HMMPfam
null null null 1.80e-08 cmp:Cha6605_0084
RNA polymerase sigma-24 subunit {ECO:0000313|EMBL:CCY25319.1}; TaxID=1262759 species="Bacteria; Spirochaetes; Brachyspirales; Brachyspiraceae; Brachyspira; environmental samples.;" source="Brachyspira UNIPROT
DB: UniProtKB
55.2 201.0 214 1.20e-52 R5HB28_9SPIR
sigG; RNA polymerase sigma factor RpoE; K03088 RNA polymerase sigma-70 factor, ECF subfamily alias=MEL_A1_C00001G00193 id=152895 tax=MEL_A1 species=Synechococcus elongatus genus=Synechococcus taxon_order=Chroococcales taxon_class=unknown phylum=Cyanobacteria similarity UNIREF
DB: UNIREF90
54.7 null 213 8.00e-53 cmp:Cha6605_0084