ggKbase home page

You do not have permission to do that.

Please email help@ggkbase.berkeley.edu for help.

SCNpilot_expt_500_bf_scaffold_44093_2

Organism: SCNpilot_expt_500_bf_step10_UNK

megabin RP 53 / 55 MC: 53 BSCG 51 / 51 MC: 51 ASCG 15 / 38 MC: 13
Location: comp(132..503)

Top 3 Functional Annotations

Value Algorithm Source
ABC transporter permease n=1 Tax=Rhizobium sp. JGI 0001005-K05 RepID=UPI000381992E similarity UNIREF
DB: UNIREF100
  • Identity: 79.7
  • Coverage: 123.0
  • Bit_score: 187
  • Evalue 6.90e-45
Permease component of ribose/xylose/arabinose/galactoside ABC-type transporter {ECO:0000313|EMBL:EJJ28577.1}; Flags: Precursor;; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 78.0
  • Coverage: 123.0
  • Bit_score: 184
  • Evalue 8.30e-44
inner-membrane translocator; K02057 simple sugar transport system permease protein similarity KEGG
DB: KEGG
  • Identity: 53.4
  • Coverage: 118.0
  • Bit_score: 135
  • Evalue 9.90e-30

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Rhizobium sp. CF142 → Rhizobium → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 372
ATGAGCGGCATTCCGGTCGATCGTACCATCGTCTTCGTCCATGCGCTGTCAGGGGCGCTTGCCGCAGCGGCGGCGCTGATGCTGACCGCGCGGCTGGCGGCGGCGATGCCGGCGGTGGCGGGTGACGACTGGTTGCTGCCGAGCTTCCTCGCGCCGGTGATCGGCGGCACGGCATTGTCGGGCGGCATCGTCTCGGTGGTGGGCACCATCCTTGGAGCGCTGCTGGTCTCGACCATCCGCTCGGGCCTGCTGGTCCTGGAGATCGGCAATTTCTGGCTGCCGCTGTTCCTCGGGGCGTTCCTGCTCGCGGCGATCCTCGTCGAGCGCGGGCGCGCCGCCTATGTGGCGCGAGAGCAGGCGAGGCGGGCGTGA
PROTEIN sequence
Length: 124
MSGIPVDRTIVFVHALSGALAAAAALMLTARLAAAMPAVAGDDWLLPSFLAPVIGGTALSGGIVSVVGTILGALLVSTIRSGLLVLEIGNFWLPLFLGAFLLAAILVERGRAAYVAREQARRA*