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SCNpilot_expt_500_bf_step10_UNK

In projects: SCNPILOT_EXPT_500_BF_STEP10

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 14.60 Longest contig: 61.20 Kbp Bin length: 30.73 Mbp GC content: 56.39 %
Contigs count: 13467 Features count: 39523 rRNAs count: 0 tRNAs count: 0

Genome completeness

megabin RP 53 / 55 MC: 53 BSCG 51 / 51 MC: 51 ASCG 15 / 38 MC: 13
Displaying items 251-300 of 13467 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
SCNpilot_expt_500_bf_scaffold_20059
Class: Alphaproteobacteria (66.67%)
3 1760 bp 67.61 4.12 100.74
SCNpilot_expt_500_bf_scaffold_29008
Species: Pusillimonas sp. T7-7 (50%)
2 1239 bp 58.76 2.62 100.73
SCNpilot_expt_500_bf_scaffold_28944
Species: Rhodanobacter sp. 115 (100%)
2 1242 bp 58.21 3.42 100.73
SCNpilot_expt_500_bf_scaffold_41659
Species: Afipia sp. P52-10 (50%)
2 1242 bp 66.75 2.82 100.73
SCNpilot_expt_500_bf_scaffold_35987
Genus: Flavihumibacter (66.67%)
3 1978 bp 48.23 3.67 100.71
SCNpilot_expt_500_bf_scaffold_36973
Species: Afipia sp. P52-10 (66.67%)
3 1561 bp 64.96 3.20 100.71
SCNpilot_expt_500_bf_scaffold_28102
Species: Xanthobacter autotrophicus (50%)
2 1281 bp 63.70 3.71 100.70
SCNpilot_expt_500_bf_scaffold_12895
Species: Oligotropha carboxidovorans (66.67%)
3 2708 bp 61.34 4.99 100.70
SCNpilot_expt_500_bf_scaffold_27146
Species: Bradyrhizobiaceae bacterium SG-6C (75%)
4 1871 bp 63.28 4.28 100.70
SCNpilot_expt_500_bf_scaffold_13924 3 3167 bp 48.37 7.10 100.70
SCNpilot_expt_500_bf_scaffold_33437
Species: Rhizobium sp. R1-200B4 (50%)
2 1022 bp 68.30 4.16 100.69
SCNpilot_expt_500_bf_scaffold_21740
Species: Mesorhizobium sp. L103C120A0 (50%)
2 1633 bp 58.54 4.90 100.67
SCNpilot_expt_500_bf_scaffold_33045
Species: Devosia sp. DDB001 (50%)
2 1040 bp 69.13 2.40 100.67
SCNpilot_expt_500_bf_scaffold_29979
Species: Nitratireductor indicus (50%)
2 1195 bp 65.77 3.14 100.67
SCNpilot_expt_500_bf_scaffold_43275
Species: Cystobacter violaceus (50%)
2 1207 bp 68.35 3.94 100.66
SCNpilot_expt_500_bf_scaffold_29599
Species: Methyloceanibacter caenitepidi (50%)
2 1213 bp 65.38 3.30 100.66
SCNpilot_expt_500_bf_scaffold_19142 3 1842 bp 62.98 2.71 100.65
SCNpilot_expt_500_bf_scaffold_32271
Species: Starkeya novella (100%)
2 1079 bp 56.63 4.17 100.65
SCNpilot_expt_500_bf_scaffold_32003
Species: R_Alphaproteobacteria_66_14 (66.67%)
3 1094 bp 65.72 3.43 100.64
SCNpilot_expt_500_bf_scaffold_37675
Species: Alicycliphilus denitrificans (100%)
4 1911 bp 61.70 18.45 100.63
SCNpilot_expt_500_bf_scaffold_14610
Phylum: Chloroflexi (66.67%)
3 2409 bp 60.69 3.53 100.62
SCNpilot_expt_500_bf_scaffold_31234
Species: Afipia sp. 1NLS2 (50%)
2 1136 bp 64.88 13.42 100.62
SCNpilot_expt_500_bf_scaffold_27692
Species: Kutzneria albida (50%)
2 1300 bp 54.23 3.46 100.62
SCNpilot_expt_500_bf_scaffold_27558
Order: Rhizobiales (66.67%)
3 1306 bp 67.61 3.64 100.61
SCNpilot_expt_500_bf_scaffold_24466
Genus: Microbacterium (66.67%)
3 2147 bp 71.31 6.40 100.61
SCNpilot_expt_500_bf_scaffold_30603
Species: Acidovorax sp. KKS102 (100%)
2 1166 bp 65.95 4.07 100.60
SCNpilot_expt_500_bf_scaffold_26560
Species: Nitrolancea hollandica (50%)
2 1351 bp 62.18 4.63 100.59
SCNpilot_expt_500_bf_scaffold_33591
Species: Caulobacter sp. AP07 (100%)
2 1014 bp 65.48 4.19 100.59
SCNpilot_expt_500_bf_scaffold_34971 2 1524 bp 32.94 7.87 100.59
SCNpilot_expt_500_bf_scaffold_25796
Species: Bradyrhizobium sp. ORS 375 (50%)
2 1387 bp 65.75 3.24 100.58
SCNpilot_expt_500_bf_scaffold_10951
Species: Acidovorax sp. KKS102 (80%)
5 4892 bp 69.42 4.14 100.57
SCNpilot_expt_500_bf_scaffold_20146 3 1754 bp 58.27 4.42 100.57
SCNpilot_expt_500_bf_scaffold_32525
Species: Acidovorax sp. KKS102 (100%)
3 1065 bp 70.14 3.29 100.56
SCNpilot_expt_500_bf_scaffold_38596
Species: Polaromonas sp. JS666 (50%)
2 1426 bp 61.50 3.33 100.56
SCNpilot_expt_500_bf_scaffold_25024
Genus: Pseudomonas (50%)
4 1429 bp 71.17 50.21 100.56
SCNpilot_expt_500_bf_scaffold_8239 11 4645 bp 60.00 4.95 100.56
SCNpilot_expt_500_bf_scaffold_23551
Domain: Bacteria (66.67%)
3 2503 bp 60.29 4.10 100.56
SCNpilot_expt_500_bf_scaffold_28490
Species: Flavobacterium sp. F52 (50%)
2 1262 bp 45.72 2.38 100.55
SCNpilot_expt_500_bf_scaffold_21657
Species: Legionella oakridgensis (100%)
2 1638 bp 42.00 1.83 100.55
SCNpilot_expt_500_bf_scaffold_13449 6 2605 bp 50.86 6.33 100.54
SCNpilot_expt_500_bf_scaffold_23878
Species: Devosia geojensis (50%)
2 1495 bp 67.36 3.18 100.54
SCNpilot_expt_500_bf_scaffold_27314
Species: Adineta vaga (50%)
2 1316 bp 37.08 5.70 100.53
SCNpilot_expt_500_bf_scaffold_35109
Species: Herbaspirillum sp. CF444 (50%)
2 1701 bp 71.60 4.12 100.53
SCNpilot_expt_500_bf_scaffold_20768
Species: Afipia broomeae (66.67%)
3 1704 bp 64.91 3.81 100.53
SCNpilot_expt_500_bf_scaffold_30539
Species: Lutibaculum baratangense (75%)
4 1922 bp 60.56 4.42 100.52
SCNpilot_expt_500_bf_scaffold_18035
Genus: Microbacterium (100%)
4 1952 bp 69.93 5.25 100.51
SCNpilot_expt_500_bf_scaffold_19841
Species: R_Alphaproteobacteria_66_14 (50%)
4 2370 bp 66.03 3.16 100.51
SCNpilot_expt_500_bf_scaffold_33830
Species: bacterium YEK0313 (50%)
2 1003 bp 65.90 2.99 100.50
SCNpilot_expt_500_bf_scaffold_27400
Class: Alphaproteobacteria (66.67%)
3 2418 bp 64.81 4.34 100.50
SCNpilot_expt_500_bf_scaffold_42288
Species: Candidatus Caedibacter acanthamoebae (100%)
2 1209 bp 43.59 4.34 100.50
Displaying items 251-300 of 13467 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.