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SCNpilot_expt_500_bf_scaffold_38_19

Organism: SCNPILOT_EXPT_1000_BF_Xanthomonadales_66_270

near complete RP 52 / 55 MC: 1 BSCG 51 / 51 MC: 1 ASCG 13 / 38 MC: 1
Location: comp(26127..26693)

Top 3 Functional Annotations

Value Algorithm Source
ECF subfamily RNA polymerase sigma-24 factor n=1 Tax=Gloeobacter kilaueensis JS1 RepID=U5QMR3_9CYAN similarity UNIREF
DB: UNIREF100
  • Identity: 42.5
  • Coverage: 186.0
  • Bit_score: 150
  • Evalue 1.40e-33
RNA polymerase sigma 70 {ECO:0000313|EMBL:EYR68784.1}; TaxID=1444315 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter capsici AZ78.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 45.8
  • Coverage: 192.0
  • Bit_score: 155
  • Evalue 1.10e-34
ECF subfamily RNA polymerase sigma-24 factor similarity KEGG
DB: KEGG
  • Identity: 42.5
  • Coverage: 186.0
  • Bit_score: 150
  • Evalue 4.50e-34

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Taxonomy

Lysobacter capsici → Lysobacter → Xanthomonadales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 567
ATGAGCGCCGCACCGATCACCGAACTGCTGGAGCGCTGGCGGACCGGGGAAACCGGCGCCGCCGACGCGCTGATGGAGCAGGTCTACCCGCTGCTGCGCGAGATCGCCCAGTCGCGCCTGCGCCGGCATGCGCGCGGCGCGACCCTGCAGCCGACCGAACTGGCCAACGAAGCCTATGCGCGACTGCATGGCGCACGCACGACCGACTGGCGCAATCGCGCGCATTTCTTCGCGTTCTCCGCCAGGGTCATACGCAGCCTAGCGGTCGACTACGTGCGCGCCCGCGACAGCGAGAAGCGCGGCGGCCATCTGCTCCTGCTGCCGCTGGAGCAGGCCGACGACACGCCGGCCGATGCCGACGACCTCGACGTGCTGGCGATAGACCAGGCGCTCACCGATCTCGAATGCGACGACGCGGTGCTCGCGCAGATCGTCGAGCTCAAGTTCTTTTCCGGTCTCAGCACCGAGGAAATCGCCGAAACCTGCGGCCTGTCGCGGGCGACGGTCGTGCGCCGCTGGCGTTACGCGCGCGCCTGGCTGGCCGACCGCCTCGGCAACCGCACATGA
PROTEIN sequence
Length: 189
MSAAPITELLERWRTGETGAADALMEQVYPLLREIAQSRLRRHARGATLQPTELANEAYARLHGARTTDWRNRAHFFAFSARVIRSLAVDYVRARDSEKRGGHLLLLPLEQADDTPADADDLDVLAIDQALTDLECDDAVLAQIVELKFFSGLSTEEIAETCGLSRATVVRRWRYARAWLADRLGNRT*