ggKbase home page

SCNpilot_expt_500_bf_scaffold_534_9

Organism: SCNPILOT_EXPT_1000_BF_Xanthomonadales_66_270

near complete RP 52 / 55 MC: 1 BSCG 51 / 51 MC: 1 ASCG 13 / 38 MC: 1
Location: 6967..7419

Top 3 Functional Annotations

Value Algorithm Source
Helix-turn-helix domain protein n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V6A3_VARPE similarity UNIREF
DB: UNIREF100
  • Identity: 49.0
  • Coverage: 145.0
  • Bit_score: 137
  • Evalue 1.30e-29
Uncharacterized protein {ECO:0000313|EMBL:KFN48242.1}; TaxID=1121013 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas composti TR7-09 = DSM 18010.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 56.5
  • Coverage: 147.0
  • Bit_score: 153
  • Evalue 1.90e-34
XRE family transcriptional regulator similarity KEGG
DB: KEGG
  • Identity: 49.0
  • Coverage: 145.0
  • Bit_score: 137
  • Evalue 4.10e-30

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Arenimonas composti → Arenimonas → Xanthomonadales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 453
ATGCCAGACATTTCGTTGGCTTTGAAAAGCGAAATCACCCGCGTGGCCCGCAAAGCCGTGAAGGCGGAACTGGACGCACTGCGCAGCGCCAGTGCGGGCTACCGCAAGGAGATCGCAGCGCTCAAACGCACCGTGTCGGCGCTTCAACGCGACCGGGCTGCCGCGGACAAGAAGACTGCGAGAACATCCGCGCCCCTGGACGCGTCCGACGTTGAGAACGGTGGTGGCCGTACGCGGTTCAGCGCGAAAGGGCTGAAATCGCTGCGCGCCAAACTGGGGCTGTCGGCGCAGGAGTTCGGTCGCCTGGCGGGCGCCTCGGGCCAATCCATCTACAACTGGGAACAAGGCAAAAACACACCCCGCCGGGAGCAAGCTCAGCGAATCGCTGCGCTGCGTGGCGTTGGGAAGAAGGAAGCCCGATCCCGACTCGAAGCACTGGCGCCGAACGCTTAG
PROTEIN sequence
Length: 151
MPDISLALKSEITRVARKAVKAELDALRSASAGYRKEIAALKRTVSALQRDRAAADKKTARTSAPLDASDVENGGGRTRFSAKGLKSLRAKLGLSAQEFGRLAGASGQSIYNWEQGKNTPRREQAQRIAALRGVGKKEARSRLEALAPNA*