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SCNpilot_expt_500_bf_scaffold_144_7

Organism: SCNPILOT_EXPT_300_BF_Nitrosospira_56_20

near complete RP 52 / 55 BSCG 51 / 51 ASCG 12 / 38
Location: comp(10659..11348)

Top 3 Functional Annotations

Value Algorithm Source
transcriptional regulator n=1 Tax=Janthinobacterium lividum RepID=UPI0002887546 similarity UNIREF
DB: UNIREF100
  • Identity: 75.9
  • Coverage: 224.0
  • Bit_score: 350
  • Evalue 1.10e-93
  • rbh
Transcriptional regulator {ECO:0000313|EMBL:KIO49775.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 83.8
  • Coverage: 229.0
  • Bit_score: 393
  • Evalue 2.20e-106
kdpE; DNA-binding response regulator KdpE; K07667 two-component system, OmpR family, KDP operon response regulator KdpE similarity KEGG
DB: KEGG
  • Identity: 74.2
  • Coverage: 225.0
  • Bit_score: 348
  • Evalue 1.80e-93
  • rbh

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Taxonomy

Nitrosospira sp. NpAV → Nitrosospira → Nitrosomonadales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 690
ATGCCTGATATTCTGATAGTCGAAGACGAGCCGCATATCCGGCGTTTCGTGCGCATGGCGCTGGAAACGGAGGGATGGCATGTGTTCGAATCGGAAACCGCACGGCGCGGGCTCATCGATGCGGGAACGCGCAAACCGGATCTGATCATTCTGGATCTCGGCCTGCCTGACGGCAATGGCATCGATTTCATTTTGGATCTCAGGAAGTGGTCATCCATTCCCATTATCGTCTTATCAGCCCGGAATGAGGAACAGGACAAGATCAGGGCGCTGGATGCCGGCGCGGATGACTATCTCACCAAGCCGTTTGGCGTGGGTGAACTCATGGCGCGCATACGCGCCATGCAACGGCGCGACCTCCAGTCCCATGCCAATGAGAGCGGAGTGGTCAGGTTTGGCGATGTCAGCATCGACCTTGCGTCGCGCCTGGTCACCCGGGCCAATCAGGTGGTGCATCTGACGCCGATAGAATACCGGCTGCTGACGATGCTGGTAAAAAATGCGGGGCGCGTCGTCACCAGCCCGCAGCTCCTGCGCGCGGTCTGGGGCCCGTCGCATTCGGAAAGCGGGCACTATCTGCGCATTTACATGAGCCATTTGAGGCAAAAGCTGGAAGACGATCCGGCGCGGCCGAAATATCTGCAAACTGAAACCGCCGTAGGCTACCGGTTGCTGCTATGCCTGGAATAA
PROTEIN sequence
Length: 230
MPDILIVEDEPHIRRFVRMALETEGWHVFESETARRGLIDAGTRKPDLIILDLGLPDGNGIDFILDLRKWSSIPIIVLSARNEEQDKIRALDAGADDYLTKPFGVGELMARIRAMQRRDLQSHANESGVVRFGDVSIDLASRLVTRANQVVHLTPIEYRLLTMLVKNAGRVVTSPQLLRAVWGPSHSESGHYLRIYMSHLRQKLEDDPARPKYLQTETAVGYRLLLCLE*