ggKbase home page

SCNpilot_expt_500_bf_scaffold_302_17

Organism: SCNPILOT_EXPT_300_BF_Thiobacillus_SCN1_62_76

near complete RP 52 / 55 BSCG 51 / 51 MC: 1 ASCG 12 / 38 MC: 1
Location: comp(14731..15138)

Top 3 Functional Annotations

Value Algorithm Source
XRE family transcriptional regulator id=12495572 bin=THIO_HI species=Methylobacter tundripaludum genus=Methylobacter taxon_order=Methylococcales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria similarity UNIREF
DB: UNIREF100
  • Identity: 99.3
  • Coverage: 136.0
  • Bit_score: 267
  • Evalue 5.80e-69
Putative transcription regulator with HTH domain {ECO:0000313|EMBL:EGW23209.1}; TaxID=697282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Methylococcales; Methylococcaceae; Methylobacter.;" source="Methylobacter tundripaludum SV96.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 78.4
  • Coverage: 134.0
  • Bit_score: 212
  • Evalue 4.10e-52
XRE family transcriptional regulator similarity KEGG
DB: KEGG
  • Identity: 60.9
  • Coverage: 133.0
  • Bit_score: 158
  • Evalue 2.00e-36

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Methylobacter tundripaludum → Methylobacter → Methylococcales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 408
ATGAACGCACGACTGGATGCCGCACTGGCGCACTGGAACTACATTGCACCGCTGCTGACCCCGGCCACTACCGAGGCAGAATACCAGGCGCTGGTTGAATCGCTGGACGCGGTTCTGGATGCAGGTGGGGCGGACGAGACGCACCCGTTGGCCGGGCTGGCGGTGATGCTGGGCGATCTGGTGTCGGCCTGGGAGCATACGCATTACCCCATGCCGCCTGAAATGAGCGGAGTGGAGGTATTGCGTTTCTTGATGTCGCGTGACGGCCTGCGCCAGTCAGATTTGCCGGAGATCGGCAATCAGGCCAAGGTGTCCGAAATTCTCTCGGGCAAACGGGAAATCAACCTGCGTCAGGCAAAGGCTTTAGCGGCGCGTTTCGGTGTACCGATTGGCTTGTTTGCCGATTAG
PROTEIN sequence
Length: 136
MNARLDAALAHWNYIAPLLTPATTEAEYQALVESLDAVLDAGGADETHPLAGLAVMLGDLVSAWEHTHYPMPPEMSGVEVLRFLMSRDGLRQSDLPEIGNQAKVSEILSGKREINLRQAKALAARFGVPIGLFAD*