ggKbase home page

SCNpilot_expt_500_bf_scaffold_1041_23

Organism: SCNPILOT_EXPT_300_BF_Thiobacillus_SCN1_62_76

near complete RP 52 / 55 BSCG 51 / 51 MC: 1 ASCG 12 / 38 MC: 1
Location: comp(22558..23106)

Top 3 Functional Annotations

Value Algorithm Source
sigma-24 (FecI); K03088 RNA polymerase sigma-70 factor, ECF subfamily id=12493479 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria similarity UNIREF
DB: UNIREF100
  • Identity: 100.0
  • Coverage: 183.0
  • Bit_score: 362
  • Evalue 2.30e-97
  • rbh
sigma-24 (FecI); K03088 RNA polymerase sigma-70 factor, ECF subfamily similarity KEGG
DB: KEGG
  • Identity: 73.1
  • Coverage: 182.0
  • Bit_score: 275
  • Evalue 1.50e-71
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated similarity UNIPROT
DB: UniProtKB
  • Identity: 89.1
  • Coverage: 183.0
  • Bit_score: 330
  • Evalue 1.40e-87

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

RIFOXYA1_FULL_Hydrogenophilales_63_33_curated → Hydrogenophilales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 549
ATGCTCAGCCGCCTTCTTTTTGGCCCGTCTCGCCCAGGTATCGAAGCCTTGCGCCCGCTGCTCTACCGGATCGCCTTCGCCTGGTGCCATGATGCCGCGCTGGCGGACGATCTGGTTCAGGAAGCGCTCTCCAAGGGGTGGAAGCGGCGCGCCCAGTTGCGCGACGAGGCCGCGCTGAAGGCATGGATGGTATCGATCATGAACCACTGCTGGCTCGATCACTTGCGCAGCCGGCGCGACTTCGACGACATCGAGGACTGGCAGGACGAACTTGAGTCTGCCGCCGATGCCCCCGAGGTGCGCTGCGATCGCGAGCGGGTGATCGCCTGCGTGCGCGAGGCCGTGGCGCGCCTGCCGTTGGGCCAGCGCCAGGTGCTGACGCTGGTCGACCTGGAGGAATTCAGTTATGCCGACGTGGCTGCGATCCTGGACATCCCGGTCGGTACCGTGATGAGCCGCCTGTCGCGTGCGCGCGCATCCCTGAAAAGTCTGCTGAACCCCGCGCTGCAACAGTCGGCGGTGCAGCCGCTGCTGAGGAGGGTCAAATGA
PROTEIN sequence
Length: 183
MLSRLLFGPSRPGIEALRPLLYRIAFAWCHDAALADDLVQEALSKGWKRRAQLRDEAALKAWMVSIMNHCWLDHLRSRRDFDDIEDWQDELESAADAPEVRCDRERVIACVREAVARLPLGQRQVLTLVDLEEFSYADVAAILDIPVGTVMSRLSRARASLKSLLNPALQQSAVQPLLRRVK*