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SCNpilot_expt_500_bf_scaffold_6017_28

Organism: SCNPILOT_EXPT_300_BF_Rhodanobacter_67_27

near complete RP 46 / 55 BSCG 46 / 51 MC: 3 ASCG 11 / 38 MC: 2
Location: comp(30269..31186)

Top 3 Functional Annotations

Value Algorithm Source
tRNA pseudouridine synthase B {ECO:0000256|HAMAP-Rule:MF_01080}; EC=5.4.99.25 {ECO:0000256|HAMAP-Rule:MF_01080};; tRNA pseudouridine(55) synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA pseudouridylate synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA-uridine isomerase {ECO:0000256|HAMAP-Rule:MF_01080}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 76.8
  • Coverage: 293.0
  • Bit_score: 440
  • Evalue 1.60e-120
tRNA pseudouridine synthase B (EC:4.2.1.70) similarity KEGG
DB: KEGG
  • Identity: 75.4
  • Coverage: 293.0
  • Bit_score: 435
  • Evalue 1.10e-119
tRNA pseudouridine synthase B n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W6K1_9GAMM similarity UNIREF
DB: UNIREF100
  • Identity: 76.8
  • Coverage: 293.0
  • Bit_score: 440
  • Evalue 1.10e-120

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Taxonomy

Rhodanobacter spathiphylli → Rhodanobacter → Xanthomonadales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 918
ATGCGCAAACCACCCCGCATCCAGTACCGCGACCTGCACGGGATCGTGCTGCTCGACAAGCCGATCGGCTTGAGCTCGAACCAGGCCTTGCAAGGCGTTCGCCGGCTGTTGCGCGCGGCCAAGGGCGGCCACGCCGGTGCGCTCGACCCGCTGGCCAGCGGCCTGCTGCCCTTGTGTTTCGGCGAGGCCACCAAGCTGGCCGGCACCTTGCTCGGCACGAGCAAGGGTTATCTGGCTGAATGCCGGCTCGGCATCAGCACCGACACCGGTGACCGCGAGGGCGAGGTGATCGCACGCCAGCCGGTGCCCCGACTCGACCCTGAGCTGATCGAAGCCGCGCTGGCACCGCTGCGTGGAGCGATCCGTCAGGTGCCGCCGATGTATTCGGCGCTCAAGCAGGATGGCGAAAGACTGTACGTGAAGGCGCGCCGCGGCGAGTCGGTGGAACGGCCGGCGCGCGAGGTGGTCGTGCATCGACTGGAGCTGCTCTCCCGCGACAGCGACACCTTGCAGTTGCTGGTGGAATGCGGCTCGGGAACCTATGTGCGCTCGCTGGCGACGGATCTGGGTGCCACCCTGGGTTGCGGCGCGCACCTGACTTCGCTGCGGCGCACCTGGGTGGATCCCTTCCGCGATCCGCGCATGGTCACCATGGCCGAACTCGAGCAGGCAGCGGAGCAGGGCGACGAGGCCTTGCTGTGCCATCTGCTGCCGGTGGCCGAGGGTCTGCGCGACCTGCCGTCGGTTCACCTGGACGAGGCGCAGGCGATGGCCGTTTCGCGTGGCCAGCCGATCCAGCTTGACCCCTCGGTACCCGCCGGTCGCTGCGCGGCATTCGCGCCCGATGGTGCCTTGCTCGCCGTGCTCGAACTGGACGACACGGATTTGCCTGAAAAGCGGGCTGCGCACTTGTTGTAA
PROTEIN sequence
Length: 306
MRKPPRIQYRDLHGIVLLDKPIGLSSNQALQGVRRLLRAAKGGHAGALDPLASGLLPLCFGEATKLAGTLLGTSKGYLAECRLGISTDTGDREGEVIARQPVPRLDPELIEAALAPLRGAIRQVPPMYSALKQDGERLYVKARRGESVERPAREVVVHRLELLSRDSDTLQLLVECGSGTYVRSLATDLGATLGCGAHLTSLRRTWVDPFRDPRMVTMAELEQAAEQGDEALLCHLLPVAEGLRDLPSVHLDEAQAMAVSRGQPIQLDPSVPAGRCAAFAPDGALLAVLELDDTDLPEKRAAHLL*