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SCNpilot_expt_500_bf_scaffold_6573_7

Organism: SCNPILOT_EXPT_300_BF_Rhodanobacter_67_27

near complete RP 46 / 55 BSCG 46 / 51 MC: 3 ASCG 11 / 38 MC: 2
Location: comp(6022..6339)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor RpoE n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VXS0_9GAMM similarity UNIREF
DB: UNIREF100
  • Identity: 93.3
  • Coverage: 105.0
  • Bit_score: 197
  • Evalue 5.70e-48
RNA polymerase sigma factor RpoE {ECO:0000313|EMBL:EIL92011.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 93.3
  • Coverage: 105.0
  • Bit_score: 197
  • Evalue 8.10e-48
RNA polymerase sigma factor, sigma-70 family similarity KEGG
DB: KEGG
  • Identity: 86.7
  • Coverage: 105.0
  • Bit_score: 183
  • Evalue 3.50e-44

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Taxonomy

Rhodanobacter spathiphylli → Rhodanobacter → Xanthomonadales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 318
GTGGCGCGCAACCTCTACATCGACCACGTGCGCAGGGAACCGCACTGGTCGCCGATCCAGGAAGGCCTGGACCAGCTCGACCAGCTCGAATCCGGCCGGCTCGACTCGCAGCCCGAATCCTCCTTCGACCAGGACCTGTTGAAGCAGGCCATCGATCAACTTCCCCCGGTGCAGGCCAAGCTGGTTCGCATGTGTTACCTCGAAAGCAAAAGCCACAGCGAGATCGCGCGGGAGCTGGACATGCCGCTGGGCTCGGTCAAATCCTCGCTGCGGCGCTCGTTCGCCAAACTGCAGGGCAGCATGAGGGGCGCGCGATGA
PROTEIN sequence
Length: 106
VARNLYIDHVRREPHWSPIQEGLDQLDQLESGRLDSQPESSFDQDLLKQAIDQLPPVQAKLVRMCYLESKSHSEIARELDMPLGSVKSSLRRSFAKLQGSMRGAR*