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SCNpilot_expt_500_bf_scaffold_6573_8

Organism: SCNPILOT_EXPT_300_BF_Rhodanobacter_67_27

near complete RP 46 / 55 BSCG 46 / 51 MC: 3 ASCG 11 / 38 MC: 2
Location: comp(6790..6954)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor RpoD n=1 Tax=Rhodanobacter denitrificans RepID=I4WX43_9GAMM similarity UNIREF
DB: UNIREF100
  • Identity: 100.0
  • Coverage: 54.0
  • Bit_score: 109
  • Evalue 8.20e-22
RNA polymerase, sigma 70 subunit, RpoD similarity KEGG
DB: KEGG
  • Identity: 100.0
  • Coverage: 54.0
  • Bit_score: 109
  • Evalue 2.60e-22
RNA polymerase sigma factor RpoD {ECO:0000256|HAMAP-Rule:MF_00963}; Sigma-70 {ECO:0000256|HAMAP-Rule:MF_00963}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 100.0
  • Coverage: 54.0
  • Bit_score: 109
  • Evalue 1.10e-21

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Taxonomy

Rhodanobacter spathiphylli → Rhodanobacter → Xanthomonadales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 165
ATGCGCTTCGGCATCGACATGAACACCGACCACACCCTGGAAGAGGTCGGCAAGCAGTTCGACGTCACCCGCGAGCGGATCCGCCAGATCGAGGCCAAGGCGCTGCGCAAGCTGCGCCACCCGAGCCGCTCCGAACAGCTGCGCTCGTTCCTCGACGTCGAGTAG
PROTEIN sequence
Length: 55
MRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEQLRSFLDVE*