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SCNpilot_expt_500_bf_scaffold_7961_1

Organism: SCNPILOT_CONT_300_BF_Sphingomonadales_67_36

partial RP 33 / 55 BSCG 33 / 51 MC: 2 ASCG 11 / 38 MC: 1
Location: comp(3..1145)

Top 3 Functional Annotations

Value Algorithm Source
DNA-directed RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Short=RNAP subunit beta {ECO:0000256|HAMAP-Rule:MF_01321};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01321};; RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Transcriptase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; TaxID=1219045 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium herbicidovorans (strain ATCC 700291 / DSM 11019 / NBRC; 16415 similarity UNIPROT
DB: UniProtKB
  • Identity: 87.6
  • Coverage: 395.0
  • Bit_score: 676
  • Evalue 1.60e-191
rpoB; DNA-directed RNA polymerase subunit beta; K03043 DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] similarity KEGG
DB: KEGG
  • Identity: 88.6
  • Coverage: 395.0
  • Bit_score: 674
  • Evalue 1.80e-191
DNA-directed RNA polymerase subunit beta n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IS72_9SPHN similarity UNIREF
DB: UNIREF100
  • Identity: 88.6
  • Coverage: 395.0
  • Bit_score: 674
  • Evalue 5.80e-191

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Taxonomy

Sphingobium herbicidovorans → Sphingobium → Sphingomonadales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1143
ATGGCGCTGCCTGAGACGATCACGCTGATGGACGTGTCGCCGAAGCAGCTCGTGTCGGTCGCCGCCTCGCTGATCCCGTTCCTTGAGAACGACGACGCGAACCGCGCGCTGATGGGCTCGAACATGCAGCGTCAGGCGGTGCCGTTGGTGCGCGCCGAGGCGCCGTTCGTCGGCACCGGCATGGAAGGCGTAGTCGCCCGCGACCAGGTCGATGCCAGCCGCATCGTCGTCCGCGCGACGGGCGAGGTTTCGGCCGAGGAATCGGGTGTCGACATCTACACGCTGATGAAGTTCCAGCGCTCCAACCAGTCGACCTGCATCAACCAGCGCCCGCTGGTGAAGGTGGGCGACGTGGTGCGCGCCGGCGACATCATCGCCGACGGCCCGTCGACCGAATTCGGCGAGCTGGCGCTGGGCCGCAACGCGCTCGTCGCGTTCATGCCGTGGAACGGCTACAACTACGAGGACTCGATCCTCATCTCCGAGCGGATCGTGAAGGACGACGTGTTCACCTCGATCCACATCGACGAGTTCGAGGTGGCCGCCCGCGACACGAAGCTCGGGCCGGAGGACATCACCCGCGACATCCCGAACGTCGGCGAGGAGGCGCTGCGCAACCTCGACGAGGCGGGCATCGTCTATATCGGTGCCGAGGTGGAGCCGGGCGACATCCTCGTCGGCAAGATCACGCCGAAGGGCGAAAGCCCGATGACGCCGGAAGAGAAGCTGCTGCGCGCCATCTTCGGTGAAAAGGCCAGCGACGTGCGCGACACCTCGCTTCGCCTGCCGCCGGGCGTGGCCGGTACGATCGTCGAGGTGCGCGTGTTCAACCGTCACGGCATCGACAAGGACGAGCGCGCCATGGCGATCGAGCGGGAGGAAATCGACCGCCTCGCCAAGGACCGTGAGGACGAGCGCGGCATCCTCAACCGCGCCACCTTCAATCGTCTCCGGGACATGCTGCTCGGCCAGATGGCCACTGCAGCGCCCAAGGGCGTGAAGAAGGGCATCGAGATCACCGAGGAGCTGCTTTCCGAAGTCGAGCGCCACGAGTGGTGGAAGTTCGCCGTGGCGGACGACACCGTCCAGACGCATCTGGAAGCCGTGAAGGCCCAGTATGACGAGGCGGTGAAGCTGATCGTC
PROTEIN sequence
Length: 381
MALPETITLMDVSPKQLVSVAASLIPFLENDDANRALMGSNMQRQAVPLVRAEAPFVGTGMEGVVARDQVDASRIVVRATGEVSAEESGVDIYTLMKFQRSNQSTCINQRPLVKVGDVVRAGDIIADGPSTEFGELALGRNALVAFMPWNGYNYEDSILISERIVKDDVFTSIHIDEFEVAARDTKLGPEDITRDIPNVGEEALRNLDEAGIVYIGAEVEPGDILVGKITPKGESPMTPEEKLLRAIFGEKASDVRDTSLRLPPGVAGTIVEVRVFNRHGIDKDERAMAIEREEIDRLAKDREDERGILNRATFNRLRDMLLGQMATAAPKGVKKGIEITEELLSEVERHEWWKFAVADDTVQTHLEAVKAQYDEAVKLIV