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SCNpilot_expt_500_bf_scaffold_15476_1

Organism: SCNPILOT_CONT_300_BF_Rhizobiales_59_19

near complete RP 42 / 55 MC: 1 BSCG 44 / 51 MC: 6 ASCG 14 / 38 MC: 4
Location: comp(3..908)

Top 3 Functional Annotations

Value Algorithm Source
Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969}; Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969};; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969};; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 97.7
  • Coverage: 302.0
  • Bit_score: 584
  • Evalue 1.10e-163
mfd; transcription-repair coupling factor; K03723 transcription-repair coupling factor (superfamily II helicase) [EC:3.6.4.-] similarity KEGG
DB: KEGG
  • Identity: 95.4
  • Coverage: 302.0
  • Bit_score: 575
  • Evalue 1.20e-161
Transcription-repair-coupling factor n=1 Tax=Rhizobium freirei PRF 81 RepID=N6UZP8_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 97.7
  • Coverage: 302.0
  • Bit_score: 584
  • Evalue 8.10e-164

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Taxonomy

Rhizobium freirei → Rhizobium → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 906
ATGACCCCCGGTTTCGACGCGAAGAAGGTGCTCGCCGCAAGCGAGCCGCTGACGGTCGGTCATGTTCCGGCCGGCATGGAGCCATTCCTGCTTGCCGATCTGGCGCGAGCCGGTCAGCCGGTCGCCTATGTCATGTCCGACGGCCAGCATATGGCCGATGTCGAACAGATGCTCGGCTTCATCGCGCCCGAAATACCGGTTCTCACTCTTCCCGCCTGGGATTGCCTTCCCTATGACCGCGTGTCGCCGAGTTCCGATACCTCGGCCCGTCGGCTGGCGGCGCTCTCCGGCCTGATCGCGCATCATCGCAAGCCACATGCGGCTATCGTGCTGGTCACCGTCAATGCCATGCTGCAGAAGGTCGCGCCGCAGGATGTGATTGAAAGCCTGGCGGTTTCGGCCCGTCCCGGCAATCAGGTGCGGATGGATGATATTGCCAGCCGCTTGGAGCGCAATGGTTTCGATCGCGTCGCGACCGTGCGCGAAGTCGGCGAATTCGCCGTTCGCGGCGGCATTCTCGATGTCTTCGTTCCGGGCACGGAGGAGCCGGTTCGTCTGGATTTCTTCGGCGATACGCTGGAAAGCATCCGCAGCTTCGATCCGGCCAGCCAGCGCACGACGGGGCAGGTGCGTTCGCTCGATCTCAATCCGATGAGCGAGGTGACGCTGACGCCGGATACGATCAGCCGCTTCCGCAAGAATTATCTTTCGGCCTTTGGCGCCGCCACGCGCGACGATGCGCTCTATGTCGCCGTGTCCGAAGGTCGCCGCTACGCCGGCATGGAACATTGGCTGCCGCTCTTCTACGAGAAGCTCGAAACGGTCTTCGATTACCTCAAGTGCTTCCGGCTGGTCACGGATCATACCGTCCGCGACGCCGCCGAGGAGCGCTCTAAGCTCGTTTTC
PROTEIN sequence
Length: 302
MTPGFDAKKVLAASEPLTVGHVPAGMEPFLLADLARAGQPVAYVMSDGQHMADVEQMLGFIAPEIPVLTLPAWDCLPYDRVSPSSDTSARRLAALSGLIAHHRKPHAAIVLVTVNAMLQKVAPQDVIESLAVSARPGNQVRMDDIASRLERNGFDRVATVREVGEFAVRGGILDVFVPGTEEPVRLDFFGDTLESIRSFDPASQRTTGQVRSLDLNPMSEVTLTPDTISRFRKNYLSAFGAATRDDALYVAVSEGRRYAGMEHWLPLFYEKLETVFDYLKCFRLVTDHTVRDAAEERSKLVF