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SCNpilot_expt_500_bf_scaffold_4118_7

Organism: SCNPILOT_EXPT_750_P_Devosia_62_26

near complete RP 50 / 55 MC: 2 BSCG 50 / 51 MC: 4 ASCG 11 / 38 MC: 2
Location: comp(5880..6752)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor RpoH n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R951_PELHB similarity UNIREF
DB: UNIREF100
  • Identity: 84.1
  • Coverage: 290.0
  • Bit_score: 496
  • Evalue 1.60e-137
  • rbh
RNA polymerase sigma factor RpoH {ECO:0000256|HAMAP-Rule:MF_00961}; RNA polymerase sigma-32 factor {ECO:0000256|HAMAP-Rule:MF_00961}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 93.1
  • Coverage: 288.0
  • Bit_score: 532
  • Evalue 2.90e-148
RNA polymerase sigma factor RpoH; K03089 RNA polymerase sigma-32 factor similarity KEGG
DB: KEGG
  • Identity: 84.1
  • Coverage: 290.0
  • Bit_score: 496
  • Evalue 5.20e-138
  • rbh

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Taxonomy

Devosia riboflavina → Devosia → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 873
ATGGCCCAAACCAATCTTCCTGTCCTCTCCGCCGAGGGAGGGCTTAGCCGCTATCTTCAGGAAATCCGCAAGTTCCCCATGCTGGAACCGGATGAAGAATATATGCTGGCCAAGCGCTATAAGGAACATGGCGATCCCGGCGCGGCGCAAAAGCTCATCACCAGCCATCTGCGCCTCGTGGCGAAGATTGCCATGGGGTATCGCGGCTATGGCCTGCCGATCTCCGAAGTGATCTCGGAAGGCAATGTCGGCCTCATGCATGCGGTCAAGCGCTTCGAGCCTGAAAAGGGCTTCCGACTGGCGACTTACGCCATGTGGTGGATACGTGCCGCCATTCAGGAATATGTGCTGCGCAGCTGGAGCCTTGTAAAGATCGGCACCACGGCGGCGCAGAAGCGTCTGTTCTTCAACCTGCGCAAGGTGAAGGGCCAGATTGCGGCACTCGAGGACGGTGCGCTGCATCCCGACCAGATCAAGCAGATCGCCACCACTCTCAAGGTCACTGAAAACGACGTGGTGGAGATGAATGCACGCCTGTCCGGCGACGCTTCGCTCAATTCGCCTATGCGGGCGGATGAGGGCTCGTCCGAATGGCAGGATTGGCTGGTGGACGATACGCCTGATGCCGAAACCAGCCTGGGCGACAGCCAGCAGCATGATGAGCGCATGTCGTTGCTCACCAATGCCATGGATGTGCTCAACGAGCGTGAGCGGGCAATTTTCCAGGCCCGCCGCTTGAAGGAAAATCCGGCAACGCTGGAAGAGCTGGCCCAGCAATATGACGTCAGCCGCGAGCGCATTCGCCAGATCGAGGTGCGTGCCTTCGAAAAGGTGCAGGAAGCCGTCCGCGGCGCTGCCCGCGCCGACGCCTGA
PROTEIN sequence
Length: 291
MAQTNLPVLSAEGGLSRYLQEIRKFPMLEPDEEYMLAKRYKEHGDPGAAQKLITSHLRLVAKIAMGYRGYGLPISEVISEGNVGLMHAVKRFEPEKGFRLATYAMWWIRAAIQEYVLRSWSLVKIGTTAAQKRLFFNLRKVKGQIAALEDGALHPDQIKQIATTLKVTENDVVEMNARLSGDASLNSPMRADEGSSEWQDWLVDDTPDAETSLGDSQQHDERMSLLTNAMDVLNERERAIFQARRLKENPATLEELAQQYDVSRERIRQIEVRAFEKVQEAVRGAARADA*