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SCNpilot_expt_500_bf_scaffold_4118_8

Organism: SCNPILOT_EXPT_750_P_Devosia_62_26

near complete RP 50 / 55 MC: 2 BSCG 50 / 51 MC: 4 ASCG 11 / 38 MC: 2
Location: comp(7014..8039)

Top 3 Functional Annotations

Value Algorithm Source
Pseudouridine synthase {ECO:0000256|RuleBase:RU362028}; EC=5.4.99.- {ECO:0000256|RuleBase:RU362028};; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 85.0
  • Coverage: 341.0
  • Bit_score: 598
  • Evalue 5.10e-168
ribosomal large subunit pseudouridine synthase D; K06180 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] similarity KEGG
DB: KEGG
  • Identity: 65.0
  • Coverage: 323.0
  • Bit_score: 425
  • Evalue 1.30e-116
Pseudouridine synthase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R950_PELHB similarity UNIREF
DB: UNIREF100
  • Identity: 65.0
  • Coverage: 323.0
  • Bit_score: 425
  • Evalue 4.20e-116

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Taxonomy

Devosia chinhatensis → Devosia → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1026
ATGGCAGAAGATACCGATTTCGAGTTCGAGGGCGAGCCCATTGAGGTTGTCGTCGATGCCGACATGGCCGGCGGCAGGCTGGATGCCGTGCTGGCCAAAGCCCACGACGTTTTGAGCCGCAGCCGCATCAAGGACCTAATCCTTGGTGGCGCCGTCAGCGTCGACGGGGCTGGTGTCAGCGAACCCAAATATAGACTGAAGGCCGGGGAGACAATCACCCTTCTTGCCCCGCCCCCGGAAGATCCCGAGCCGCAGGCCGAGGACATTCCGCTCGATATCCTTTATGAGGACGACCATCTGATCGTCATCAACAAGCCGGTCGGCATGGTGGTGCATCCCGCACCCGGCTCGCCCAATGGCACGCTGGTCAATGCACTGATCTTTCATTGCGGCGACAGCCTCAAGGGCATTGGCGGGGTCAAGCGACCGGGGATCGTGCATCGCCTCGACAAGGACACATCCGGGGTGATGGTCGCCGCCAAGACCGAAAAGGCGCATAAGCATCTCTCGGCCCAATTTGCTGATCACGGACGCACCGGTCCATTGCATCGCGCATATATTGCCTTTGCCTGGGGCACGACGCAGTCGGGTGTCGGCACGGTCGACGCGCCTCTGGGGCGCGACCCCGGCAATCGGTTGAAGCAGGCGGTGCTGCGCCATGGTCGCGAAGCGATTACGCACTATGCCGTAGAAGGCCGCTATGGTGGCGATGGCTGGGACGTCACTCGCATTCAATGCCAACTCGAAACCGGCCGCACGCATCAAATCCGCGTCCATATGGCTCATATCGGCCACCCACTTGTCGCCGATGCGCTTTATGCGTCGGGGTTTGTGACCAAGGTGAACAAGCTCCCTGAGGACCTGGCCGATATCGTGCGCAATCTGGGCCGACAGGCGCTGCATGCCGCAGAACTTGGTTTCGAGCATCCTGCCACTGGCGAGGAAATGCTGTTCGAGGCGGATTTGCCCGAGGATCTGCAGGCCCTGCAGGATGCGCTGGACGCCTATGATCACTCGGTCGCTTAG
PROTEIN sequence
Length: 342
MAEDTDFEFEGEPIEVVVDADMAGGRLDAVLAKAHDVLSRSRIKDLILGGAVSVDGAGVSEPKYRLKAGETITLLAPPPEDPEPQAEDIPLDILYEDDHLIVINKPVGMVVHPAPGSPNGTLVNALIFHCGDSLKGIGGVKRPGIVHRLDKDTSGVMVAAKTEKAHKHLSAQFADHGRTGPLHRAYIAFAWGTTQSGVGTVDAPLGRDPGNRLKQAVLRHGREAITHYAVEGRYGGDGWDVTRIQCQLETGRTHQIRVHMAHIGHPLVADALYASGFVTKVNKLPEDLADIVRNLGRQALHAAELGFEHPATGEEMLFEADLPEDLQALQDALDAYDHSVA*