ggKbase home page

SCNpilot_expt_500_bf_scaffold_15433_3

Organism: SCNPILOT_EXPT_750_BF_Myxococcales_68_20

partial RP 37 / 55 MC: 6 BSCG 35 / 51 MC: 4 ASCG 7 / 38
Location: 1544..2083

Top 3 Functional Annotations

Value Algorithm Source
ECF-family RNA polymerase sigma factor n=1 Tax=Sorangium cellulosum (strain So ce56) RepID=A9GQ03_SORC5 similarity UNIREF
DB: UNIREF100
  • Identity: 47.8
  • Coverage: 161.0
  • Bit_score: 143
  • Evalue 2.80e-31
ECF family RNA polymerase sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily similarity KEGG
DB: KEGG
  • Identity: 47.8
  • Coverage: 161.0
  • Bit_score: 143
  • Evalue 9.00e-32
ECF-family RNA polymerase sigma factor {ECO:0000313|EMBL:CAN96828.1}; TaxID=448385 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Sorangium.;" source="Sorangium cellulosum (strain So ce56) (Polyangium cellulosum (strain; So ce56)).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 47.8
  • Coverage: 161.0
  • Bit_score: 143
  • Evalue 4.00e-31

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Sorangium cellulosum → Sorangium → Myxococcales → Deltaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 540
GTGCAAGCTTCGCTCGTCCACGGCGTCCCCCTGCAGGAAGCGACCTGCGACGCCGTGCACGCCCCGATGACGGTCGACGCGCTCTTCTCCACCTACGCCGGCTTCGTCTGGCGCACCCTCCGGCACTTCGGGGTGGCGCCGGTGGATCTCGAGGACCAGACGCAGGAGGTCTTCCTGGTAGCGCATCGCCGGCTGGCGCAGTGGGACGGACAGCAGCCCCGACCGTGGCTCTACGGAATCGCGCGCCGCTGCGCGGCTGCATACAGACGGCAGGCCCATCGCCGTCTCGAGCATCCGTTCGAGACGTTGCCTGAAGGTCAAGATCGACACGATTCCTCGGAGCGCGCCGAGCTCGGCTTTCTCAACCGAGTCCTCCAGTCGCTCGACGAGGACAAGAGAGCCGTTCTCCTTCTTTACGAAGTCGAAGAAATGTCGATGCGCGAAGTTGCCGAGTCCGTCCAGTGCCCGCTCCAGACCGCGTATACGCGCCTCTATGCAGCGCGCCGTGAGATCGCGCGAGCTCTCGAGGAGAAGAAATGA
PROTEIN sequence
Length: 180
VQASLVHGVPLQEATCDAVHAPMTVDALFSTYAGFVWRTLRHFGVAPVDLEDQTQEVFLVAHRRLAQWDGQQPRPWLYGIARRCAAAYRRQAHRRLEHPFETLPEGQDRHDSSERAELGFLNRVLQSLDEDKRAVLLLYEVEEMSMREVAESVQCPLQTAYTRLYAARREIARALEEKK*