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SCNpilot_expt_500_bf_scaffold_12801_1

Organism: SCNPILOT_EXPT_750_P_Alphaproteobacteria_36_9_partial

partial RP 28 / 55 MC: 1 BSCG 28 / 51 MC: 2 ASCG 7 / 38
Location: comp(3..2699)

Top 3 Functional Annotations

Value Algorithm Source
Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969}; Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969};; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969};; TaxID=244581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Caedibacter.;" source="Candidatus Caedibacter acanthamoebae.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 81.9
  • Coverage: 897.0
  • Bit_score: 1489
  • Evalue 0.0
transcription-repair coupling factor; K03723 transcription-repair coupling factor (superfamily II helicase) [EC:3.6.4.-] similarity KEGG
DB: KEGG
  • Identity: 50.5
  • Coverage: 886.0
  • Bit_score: 888
  • Evalue 2.50e-255
transcription-repair coupling factor n=1 Tax=Fodinicurvata sediminis RepID=UPI0003B77D71 similarity UNIREF
DB: UNIREF100
  • Identity: 50.9
  • Coverage: 909.0
  • Bit_score: 926
  • Evalue 2.00e-266

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Taxonomy

Candidatus Caedibacter acanthamoebae → Caedibacter → Rickettsiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 2697
ATGCAGATAGTAAAACTCGATCATTTTATTAAAAAATCTTCACATACCACCGTGGGCGGCATTCCTGAAGGGGCGGAAGTTTTTCTATTAAATGAGATATTAAAGCAGAACTTAAGCTCACCCTTGATTTACATATGTCGTCATGAGTCCCAGATAATTCAGATTCAGTCTACGCTCAGGTTTCTGTATCCGTCATTGGAAATCTTAATCTTTCCTCCGTGGGATTGTTTACCTTATGATCGTATGTCTCCTAAAAGGGATATTGTTGGTGAGCGTGTTGCGACCTTACTTAAACTCAATAAAGGTTTTGATAAGCCTAGGCTTATCATTACAACTATTCAAGCATTTCTTCAGCGCGTTGTTCCGAAAGAAATATTTAACGATGCAGAACTTTATTTAAAAGAAGGTGGAAGTTTTAATCTTAAAACTTTTGAAAATTACTGTTCTAAATATGGTTTTATGCGTGTCTCAACAGTAATAGAACCTTCTGAATATGCCATACGCGGAGGTATTATTGATTTATTCCCCTCAAGCTTAGAGCAACCTTGTCGCATTGATCTTTTTGGGGATGAGATTGATAGTATTAAGATCTTTGATCCTTTCACGCAGCGCAGCTTAGAAAATGTTAAGGAAGTTCATTTAACGCCAAGTTGTGAGGTCTTGCTTGATGAAAAGTCGATTGAAATATTTCGCACTTCTTATCGAAAAGTCTTTGGGCATACAGGAGAAAAAGATCCTCTTTTTCAAGCCATTAGTTCAGGTCAATCTTATGCAGGTATGGAGCATTGGCTCCCTCTATTTTATCCGCATCTTGAAACATTACCAGATTATGCGCCTGAGGCGACTTTAGTTTTTGATAGCAAAGCCCTTGAAACGGCAAAAACGCAACTTGAACTTATCGAAGAAAATTATCAGGCAAGACAAGAATTTATAGCTGTCAAAACAGATAACAGGCCTCCATATTATCCACTGTTGCCAACGTCATTGTACATTCCTCTTGATGAAATTGAGGCGATTATCAAGACAAAGACAGTTATACATTTTTCACCTTTCATTAAAGAAGGAAGTCCTCATATTGAAGGACGTATAATACCGGATTTTAGTGCAGCAAGAGCTCAACAGGATATAAATCTTATAGAAGCATTTAAAGCGCGAGCAGAAAATTATTTAAAAGCAGGAAAACGAGTTCTCCTTACTTGTATGACGACAGGTTCACGTTTGAGGCTTCAAGGGCTTCTACAAGACCATGAGAGTCAAGCATCTTTAGTGGATCTCTGGGATGACTTTATCGCTCTCCCAGGACATGTCATAGGGCTTGCTTTGCTTCCGATAGAGCGTGGTTTTGAGGTAGGTAATTTTGTTTTTATAACTGAGCAAGATATTTTTGGCGAACGACAGAGCCAACCAATTAAAAGAAAACGACGTTCTGATCTTTTTATTGCTGAAACCTCAAGTTTAAATGAAGGGGATTATGTTGTGCATCAAGAGCATGGCATAGGACAGTTTCAAGGTCTTCAAACATTACAAGTTGATAATCTTCCCCATGACTGTGTCTGCCTTGTCTATGCTGAAGGTGATAAGCTCTTTGTTCCAGTTGAAAACTTAGACATCTTATCTCGTTATGGTGGCGAAGACAGTGTTGTATCTTTGGATAAACTGGGAAGCTCAGCATGGCAACATCGGAAAGCAAAAGTTAAGAAAAGGCTTGAAGATATTGCTGAGCATTTGATTGCTCTTGCAGCTGAGCGTTCTTTACGCGTGGGCGAGGTTTATCACCCTTCAGAAGGTCTTTATAACGAATTTGCTGCGCGTTTCCCTTATAATGAAACAGAGGATCAAGAGCGGGCTATCCAAGATGTCTTGCAGGATTTAGAGTCGGGGAAACCCATGGATCGTCTAATCTGTGGCGATGTGGGGTTTGGAAAGACAGAGATTGCTTTACGGGCGGCTTTTGTGGTTGCGTCTGCGGGGAAGCAAGTCGCTATTATTACGCCAACGACCTTGTTATGCCGCCAACATTATCAAAATTTTCAAAAACGGTTTGAAGGTTTTGGTTTGAAGGTTGCGCAGTTATCGCGTCTGGTGTCCGCAAAAGAAACCTTACAAATTAAAGAAGGCTTAGAAAAAGGGCATATTAATTTAGTTATAGGGACACATGCAATTCTGGCTCAATCTACACAGTTTAAAAATCTTGGGCTTGTAATCGTAGATGAAGAACAGCATTTTGGTGTGAAACAAAAGGAAAAATTAAAAGATCTACAAAAAGATGTGCACGTTTTAACACTCACGGCGACACCGATTCCAAGAACGCTTCAGATGTCGTTGAGTGGTGTGCGAGATATGAGCATTGTAGCGACACCACCGATTGATCGACTTGCGGTAAGAACTTTTGTGATGCCTTATGACGAGATTGTAATCCGTGAAGCATTATTGCGAGAATTTAATCGAGGCGGGCAAGTTTTCTATGTTTGCCCACGCATTGAAGATCTTGAGATTATTCGTGAAAAATTAAGAGCTTTAATGCCGGAAGCTAAAGTTGCTGTTGCACATGGACAACTTTCGCCGACAGTTCTTGAGAAGATCATGAACGATTTTTATGATCGTCATTATTCAATTCTGCTTTCAACCAATATTATCGAATCAGGCCTTGATATTCCGGCGGTCAATACAATTATTATTCACCGATCGGATCATTTT
PROTEIN sequence
Length: 899
MQIVKLDHFIKKSSHTTVGGIPEGAEVFLLNEILKQNLSSPLIYICRHESQIIQIQSTLRFLYPSLEILIFPPWDCLPYDRMSPKRDIVGERVATLLKLNKGFDKPRLIITTIQAFLQRVVPKEIFNDAELYLKEGGSFNLKTFENYCSKYGFMRVSTVIEPSEYAIRGGIIDLFPSSLEQPCRIDLFGDEIDSIKIFDPFTQRSLENVKEVHLTPSCEVLLDEKSIEIFRTSYRKVFGHTGEKDPLFQAISSGQSYAGMEHWLPLFYPHLETLPDYAPEATLVFDSKALETAKTQLELIEENYQARQEFIAVKTDNRPPYYPLLPTSLYIPLDEIEAIIKTKTVIHFSPFIKEGSPHIEGRIIPDFSAARAQQDINLIEAFKARAENYLKAGKRVLLTCMTTGSRLRLQGLLQDHESQASLVDLWDDFIALPGHVIGLALLPIERGFEVGNFVFITEQDIFGERQSQPIKRKRRSDLFIAETSSLNEGDYVVHQEHGIGQFQGLQTLQVDNLPHDCVCLVYAEGDKLFVPVENLDILSRYGGEDSVVSLDKLGSSAWQHRKAKVKKRLEDIAEHLIALAAERSLRVGEVYHPSEGLYNEFAARFPYNETEDQERAIQDVLQDLESGKPMDRLICGDVGFGKTEIALRAAFVVASAGKQVAIITPTTLLCRQHYQNFQKRFEGFGLKVAQLSRLVSAKETLQIKEGLEKGHINLVIGTHAILAQSTQFKNLGLVIVDEEQHFGVKQKEKLKDLQKDVHVLTLTATPIPRTLQMSLSGVRDMSIVATPPIDRLAVRTFVMPYDEIVIREALLREFNRGGQVFYVCPRIEDLEIIREKLRALMPEAKVAVAHGQLSPTVLEKIMNDFYDRHYSILLSTNIIESGLDIPAVNTIIIHRSDHF