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SCNpilot_expt_500_bf_scaffold_25236_1

Organism: SCNPILOT_CONT_300_BF_Alphaproteobacteria_65_35

partial RP 6 / 55 MC: 1 BSCG 6 / 51 MC: 1 ASCG 2 / 38
Location: 2..370

Top 3 Functional Annotations

Value Algorithm Source
RND family efflux transporter, MFP subunit n=1 Tax=Herbaspirillum sp. YR522 RepID=J3HQ24_9BURK similarity UNIREF
DB: UNIREF100
  • Identity: 40.3
  • Coverage: 149.0
  • Bit_score: 88
  • Evalue 4.40e-15
RND family efflux transporter MFP subunit; K07799 putative multidrug efflux transporter MdtA similarity KEGG
DB: KEGG
  • Identity: 42.4
  • Coverage: 99.0
  • Bit_score: 82
  • Evalue 1.30e-13
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated similarity UNIPROT
DB: UniProtKB
  • Identity: 66.7
  • Coverage: 69.0
  • Bit_score: 96
  • Evalue 3.80e-17

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Taxonomy

R_Alphaproteobacteria_66_14 → Rhodospirillales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 369
TATCTCGTGAAGCCCGACGATACGGTCGAGGTGAGGGTGGTCGAGCTTGGCGCGACGGACGGTGAGAAGGTGGCGATCCTCAAGGGCCTTCAGCTTGGCGACCAGGTCGTGGTCGACGGCGTCGACCGGCTGCGCGACGGCGCCAAGATCCGCCGGCCGACGCGCTCGGCCGGAGGACCGCCCATCGCCAACGCGCCTCCCGATGCGCCAGCCCCCGGCGTGGCGCCGCAAGGCCGAGGTCAACAGGGCCAAGGTCAGCAAGGACAGGGCCCGCAGGGTCAAAGGCGGCAGCAGCAGGCACCGGGTGGCCCAGGCGCGCCCGGCGGTGCTGCGGCGGCCCAGCCGGCGCCAGCCCAGGCGAATCGCTAA
PROTEIN sequence
Length: 123
YLVKPDDTVEVRVVELGATDGEKVAILKGLQLGDQVVVDGVDRLRDGAKIRRPTRSAGGPPIANAPPDAPAPGVAPQGRGQQGQGQQGQGPQGQRRQQQAPGGPGAPGGAAAAQPAPAQANR*