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SCNpilot_cont_1000_p_UNK

In projects: SCNPILOT_CONT_1000_P

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 16.58 Longest contig: 150.06 Kbp Bin length: 104.08 Mbp GC content: 53.80 %
Contigs count: 55582 Features count: 142933 rRNAs count: 0 tRNAs count: 0

Genome completeness

megabin RP 53 / 55 MC: 52 BSCG 51 / 51 MC: 51 ASCG 25 / 38 MC: 19
Displaying items 151-200 of 55582 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
SCNpilot_cont_1000_p_scaffold_133677
Species: Lodderomyces elongisporus (50%)
2 1021 bp 58.96 81.29 104.02
SCNpilot_cont_1000_p_scaffold_54104
Order: Sphingomonadales (60%)
5 1321 bp 60.79 3.03 104.01
SCNpilot_cont_1000_p_scaffold_49982
Species: Angomonas deanei (50%)
2 1399 bp 53.90 4.29 104.00
SCNpilot_cont_1000_p_scaffold_65113 3 1154 bp 58.32 3.03 103.99
SCNpilot_cont_1000_p_scaffold_48312
Species: Microcystis aeruginosa (50%)
2 1434 bp 49.37 5.58 103.98
SCNpilot_cont_1000_p_scaffold_86042
Species: Danio rerio (50%)
2 1258 bp 58.35 65.58 103.98
SCNpilot_cont_1000_p_scaffold_82600
Species: Gluconobacter oxydans (50%)
2 1515 bp 71.29 5.45 103.96
SCNpilot_cont_1000_p_scaffold_53390
Species: Mesorhizobium plurifarium (50%)
2 1334 bp 60.42 3.56 103.90
SCNpilot_cont_1000_p_scaffold_58835 3 1242 bp 45.25 6.04 103.87
SCNpilot_cont_1000_p_scaffold_67885
Species: Citrus sinensis (50%)
2 1118 bp 60.64 87.43 103.85
SCNpilot_cont_1000_p_scaffold_77393
Species: Volvox carteri (50%)
2 1017 bp 46.21 4.92 103.84
SCNpilot_cont_1000_p_scaffold_57783
Species: Pandoraea pnomenusa (50%)
2 1260 bp 63.10 5.36 103.81
SCNpilot_cont_1000_p_scaffold_64512 4 1162 bp 47.25 4.52 103.79
SCNpilot_cont_1000_p_scaffold_70996 3 1084 bp 57.10 2.31 103.78
SCNpilot_cont_1000_p_scaffold_65994
Domain: Metazoa (66.67%)
3 1142 bp 57.62 69.40 103.77
SCNpilot_cont_1000_p_scaffold_65628
Species: Acanthamoeba castellanii (50%)
2 1469 bp 65.49 97.35 103.74
SCNpilot_cont_1000_p_scaffold_39677
Species: Acanthamoeba castellanii (50%)
2 1657 bp 56.73 10.26 103.74
SCNpilot_cont_1000_p_scaffold_69863
Species: Anolis carolinensis (50%)
2 1096 bp 51.73 5.47 103.74
SCNpilot_cont_1000_p_scaffold_103378 3 1435 bp 60.63 95.82 103.69
SCNpilot_cont_1000_p_scaffold_48123
Species: Monoraphidium neglectum (50%)
2 1438 bp 73.78 3.48 103.69
SCNpilot_cont_1000_p_scaffold_44297
Species: Micromonas pusilla (50%)
2 1528 bp 47.71 5.24 103.67
SCNpilot_cont_1000_p_scaffold_46956
Species: Stegodyphus mimosarum (50%)
2 1465 bp 58.29 75.77 103.62
SCNpilot_cont_1000_p_scaffold_113771 2 1193 bp 65.05 96.81 103.60
SCNpilot_cont_1000_p_scaffold_30113 3 2025 bp 46.47 3.83 103.56
SCNpilot_cont_1000_p_scaffold_87198
Species: Mucor ambiguus (50%)
2 1727 bp 58.60 132.46 103.53
SCNpilot_cont_1000_p_scaffold_51687 3 1365 bp 49.23 4.95 103.52
SCNpilot_cont_1000_p_scaffold_70707
Species: Sinorhizobium meliloti (66.67%)
3 1087 bp 62.01 3.22 103.50
SCNpilot_cont_1000_p_scaffold_59333
Species: Skermanella stibiiresistens (50%)
2 1235 bp 74.41 3.24 103.48
SCNpilot_cont_1000_p_scaffold_58905
Order: Rhizobiales (66.67%)
3 1241 bp 64.46 4.03 103.47
SCNpilot_cont_1000_p_scaffold_31343
Order: Rhodospirillales (60%)
5 1966 bp 76.55 4.07 103.46
SCNpilot_cont_1000_p_scaffold_77014 3 1021 bp 50.83 4.65 103.43
SCNpilot_cont_1000_p_scaffold_88531
Species: Acanthamoeba castellanii (50%)
2 1370 bp 59.27 77.37 103.36
SCNpilot_cont_1000_p_scaffold_26283
Class: Alphaproteobacteria (66.67%)
3 2235 bp 68.41 3.02 103.36
SCNpilot_cont_1000_p_scaffold_55921
Genus: Pandoraea (100%)
3 1289 bp 63.54 3.69 103.34
SCNpilot_cont_1000_p_scaffold_68121
Species: Mesorhizobium opportunistum (50%)
2 1115 bp 67.89 4.26 103.32
SCNpilot_cont_1000_p_scaffold_29147 3 2750 bp 59.75 81.55 103.31
SCNpilot_cont_1000_p_scaffold_65130
Species: Acidisphaera rubrifaciens (100%)
3 1153 bp 74.41 3.47 103.30
SCNpilot_cont_1000_p_scaffold_62326 2 1191 bp 56.26 86.48 103.28
SCNpilot_cont_1000_p_scaffold_60115
Species: Microbacterium sp. C448 (50%)
2 1223 bp 70.97 3.27 103.27
SCNpilot_cont_1000_p_scaffold_31381
Species: Novosphingobium sp. MD-1 (50%)
2 1964 bp 65.02 4.07 103.26
SCNpilot_cont_1000_p_scaffold_68528 2 1569 bp 62.27 87.95 103.25
SCNpilot_cont_1000_p_scaffold_55551
Species: Nitratireductor pacificus (66.67%)
3 1296 bp 62.58 4.05 103.24
SCNpilot_cont_1000_p_scaffold_61353
Species: Asticcacaulis benevestitus (50%)
2 1206 bp 56.72 1.66 103.23
SCNpilot_cont_1000_p_scaffold_53210
Species: Trichomonas vaginalis (50%)
2 1337 bp 49.51 5.24 103.22
SCNpilot_cont_1000_p_scaffold_66532
Species: Rhodospirillum centenum (50%)
2 1712 bp 73.01 2.63 103.21
SCNpilot_cont_1000_p_scaffold_95611
Order: Rhizobiales (75%)
4 1465 bp 66.55 4.78 103.21
SCNpilot_cont_1000_p_scaffold_59634 2 1814 bp 63.45 84.62 103.20
SCNpilot_cont_1000_p_scaffold_56183
Species: Lepisosteus oculatus (50%)
2 1285 bp 51.83 4.28 103.19
SCNpilot_cont_1000_p_scaffold_124716
Species: Acanthamoeba castellanii (100%)
2 1163 bp 55.89 77.60 103.18
SCNpilot_cont_1000_p_scaffold_74111
Species: Acidisphaera rubrifaciens (50%)
2 1605 bp 73.96 6.07 103.18
Displaying items 151-200 of 55582 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.