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SCNpilot_cont_1000_bf_scaffold_2233_6

Organism: SCNPILOT_CONT_300_BF_Microbacterium_70_39_partial

partial RP 40 / 55 BSCG 40 / 51 MC: 1 ASCG 10 / 38
Location: comp(5264..6556)

Top 3 Functional Annotations

Value Algorithm Source
RND transporter n=1 Tax=Frankia sp. Iso899 RepID=UPI0003B6BEDA similarity UNIREF
DB: UNIREF100
  • Identity: 43.4
  • Coverage: 424.0
  • Bit_score: 303
  • Evalue 3.00e-79
  • rbh
Secretion protein HlyD {ECO:0000313|EMBL:EWT03150.1}; TaxID=1386089 species="Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae; Intrasporangium.;" source="Intrasporangium oryzae NRRL B-24470.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 53.6
  • Coverage: 418.0
  • Bit_score: 374
  • Evalue 2.00e-100
RND family efflux transporter MFP subunit similarity KEGG
DB: KEGG
  • Identity: 43.0
  • Coverage: 447.0
  • Bit_score: 273
  • Evalue 1.40e-70

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Taxonomy

Intrasporangium oryzae → Intrasporangium → Micrococcales → Actinobacteria → Actinobacteria → Bacteria

Sequences

DNA sequence
Length: 1293
ATGGGGGATGCTGGCGGCACAGCCGTGGAGCACCTGGTGGCCCCGGCGGACGGTGCGGGGTCGACCCGCCCCCGACGCCGCTGGTACCGGCGGCCGCTGCTGTGGGTGGCGATCGGCGTGGTGGTCCTCGCCGTGGGCGTCGGCGCGTTCTTCGTCGTGCGCGCCTCAGCGCGGGTACAGGCGTCGCCGATCACCTATCGCGTGACCAGCACCACCCTGCAGCAGACGGTCAGCACCACCGGCACGATCGAGCCCGCGCACCAGTCCCAGCTCTCGTTCGTCTCGCCGGGCACGGTCTCGAGCGTGTCGGTGAAAGTCGGAGACAAGGTCAGCGCAGGCGAGAAGCTCGCGGCTATCGACCCCGCATCGCTGCAGAGCGATGTGACGTTGGCCGAGGCGCAGGTGGCCGAGGCCCAGGCGCAGGTGTCGGCCTCGGCCGGCGGGTCGGCGACCGAGGAGGCCTCCGCGGCCGCGCAGCTCGCGTCGGCCCAGGCGAAGCTCCAGTCGGCGCAGCAGGCGCTCACCGCCGCCACGCTCGTCTCGCCCATCGCCGGAGTGGTGGCATCCGTCGGCGTCGCCGTCGGGGACCAGGTCGGCGGCTCATCGTCGACGGGAACTTCTGCGAGCCGCACAGCGACAGGATCGCCGGGGACGGGCCAGACGACGACCACCGCCACCGCCGCGATCTCGGTCATCTCGACGGACTCGTGGATCGTGAACGCCGCGGTGGGCAGCTCCGACCTGCCCAGCATCAAGCCCGGTCTGCAGGTGCAGATCACGCCGAGCGGCGCGCAGAAGCCGATCTTCGGCACGGTCAGCTCCGCCGGCATCGTGGCCAGCTCGAGCACGGGCGGCGCGGCCTCCTTCCCCGTCGTCATCGCCGTGACAGGGACACCCACGGGCCTCTACGCGGGAACCTCGGCGAGCGTGAGCATCATCGTGAAGCAGATCGCCGACGCTCTCGTCGTACCGACCCAGGCCGTCCACACGACCGACGGCAGGACCGAGGTCACGGTCGTCGAGGACGGGCGGAACGTCGAGACCCCGGTGACGCTCGGCGAGATCGCGGGCGCGCGCACCCAGATCACGAAGGGCATCGCCGCGGGCGACACCGTCCTCATCCCCGGCTTCACCGGGAGGACCGGCACCGGAGGAACGGGCACCGGCGGCAGAACCGGCGGAGGCTTCGGCGGCGGGGGCGGCTTCGGCGGAGGCTTCGGCGGCGGGGGCGGCTTCGGCGGAGCCGGCGGTGGGTTCGGCAACCGCACCGGCGGCCAGGGGGGCAACGGATGA
PROTEIN sequence
Length: 431
MGDAGGTAVEHLVAPADGAGSTRPRRRWYRRPLLWVAIGVVVLAVGVGAFFVVRASARVQASPITYRVTSTTLQQTVSTTGTIEPAHQSQLSFVSPGTVSSVSVKVGDKVSAGEKLAAIDPASLQSDVTLAEAQVAEAQAQVSASAGGSATEEASAAAQLASAQAKLQSAQQALTAATLVSPIAGVVASVGVAVGDQVGGSSSTGTSASRTATGSPGTGQTTTTATAAISVISTDSWIVNAAVGSSDLPSIKPGLQVQITPSGAQKPIFGTVSSAGIVASSSTGGAASFPVVIAVTGTPTGLYAGTSASVSIIVKQIADALVVPTQAVHTTDGRTEVTVVEDGRNVETPVTLGEIAGARTQITKGIAAGDTVLIPGFTGRTGTGGTGTGGRTGGGFGGGGGFGGGFGGGGGFGGAGGGFGNRTGGQGGNG*