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SCNpilot_cont_1000_bf_scaffold_517_22

Organism: SCNPILOT_EXPT_300_BF_Nitrosospira_56_20

near complete RP 50 / 55 BSCG 51 / 51 MC: 2 ASCG 10 / 38
Location: 26721..27560

Top 3 Functional Annotations

Value Algorithm Source
Shikimate dehydrogenase (NADP(+)) {ECO:0000256|HAMAP-Rule:MF_00222, ECO:0000256|SAAS:SAAS00228653}; Short=SDH {ECO:0000256|HAMAP-Rule:MF_00222};; EC=1.1.1.25 {ECO:0000256|HAMAP-Rule:MF_00222, ECO:0000256|SAAS:SAAS00216361};; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 74.3
  • Coverage: 269.0
  • Bit_score: 390
  • Evalue 2.20e-105
shikimate 5-dehydrogenase (EC:1.1.1.25); K00014 shikimate dehydrogenase [EC:1.1.1.25] similarity KEGG
DB: KEGG
  • Identity: 69.1
  • Coverage: 269.0
  • Bit_score: 366
  • Evalue 1.00e-98
  • rbh
Shikimate dehydrogenase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DF24_9PROT similarity UNIREF
DB: UNIREF100
  • Identity: 73.2
  • Coverage: 269.0
  • Bit_score: 386
  • Evalue 1.80e-104
  • rbh

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Taxonomy

Nitrosospira sp. NpAV → Nitrosospira → Nitrosomonadales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 840
ATGCCCGATCACTATGCTGTCATCGGCAATCCGATTGCCCATAGCAAGTCTCCATGGATTCATGCCGAGTTTTCGCGGCAGACGGGCCAGGATATGTGCTATGAGGCCATGCTTGCTCCTCTTGATGGTTTCCACGTTGCGGTAACCCATTTTCGCCAGCGAGGCGGCAAAGGCATGAATGTCACCGTTCCGTTCAAGCCCGAAGCGTATGCGATTTCCCATCGCCTGACGGAACGGGCGCATGCTGCCCAGGCAGTCAATACACTGACTTTCGCTGATGATGAGATTTTTGGCGATAATACGGATGGGGTGGGTTTGATGCGGGATATCCTCTTCAATCTCGGATTTTCCATCACTGCCAAGCGGGTGCTGCTGATGGGAGCGGGAGGTGCGGCACGCGGCGTGGTGCTGCCTTTGCTTGAGCACGCTCCCTGCATACTGGTGGTCGCCAACCGTACGAGAAGGAAAGCGGATGAATTGCAGCAGCAGTTTTCCCATCGCGGAAATATCGCTTCGGTCGATTACGCGGATCTGCGCGGAGAAAAATTCGACCTCGTCATCAACGCGACCTCGGCTGGCCTGCATGGTCAGTTGCCGGTATTGCCTCCCGATATTTTCGCCAGGGAATCCATGGCATACGATATGGTGTATGGTGACGACCGCAGCGTTTTTCTGCAATTTGCCCAGCAGCATGGCGCGGGCCTTCTTGCGGACGGCATAGGCATGCTGGTGGAGCAGGCGGCAGAATCTTTTTTCCAGTGGCGCGGGGTAAGGCCAGTCACGGAACCGGTAATCGAAATGCTGCGTCCAGGGCGGAGGTCTTCGAGCGTACCTGCTTGA
PROTEIN sequence
Length: 280
MPDHYAVIGNPIAHSKSPWIHAEFSRQTGQDMCYEAMLAPLDGFHVAVTHFRQRGGKGMNVTVPFKPEAYAISHRLTERAHAAQAVNTLTFADDEIFGDNTDGVGLMRDILFNLGFSITAKRVLLMGAGGAARGVVLPLLEHAPCILVVANRTRRKADELQQQFSHRGNIASVDYADLRGEKFDLVINATSAGLHGQLPVLPPDIFARESMAYDMVYGDDRSVFLQFAQQHGAGLLADGIGMLVEQAAESFFQWRGVRPVTEPVIEMLRPGRRSSSVPA*