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SCNpilot_cont_1000_p_scaffold_570_19

Organism: SCNPILOT_EXPT_750_P_Variovorax_66_42

near complete RP 52 / 55 MC: 3 BSCG 51 / 51 ASCG 13 / 38 MC: 1
Location: 12845..14344

Top 3 Functional Annotations

Value Algorithm Source
RND transporter n=1 Tax=Pseudomonas fluorescens RepID=UPI000375DF38 similarity UNIREF
DB: UNIREF100
  • Identity: 60.9
  • Coverage: 488.0
  • Bit_score: 557
  • Evalue 1.80e-155
  • rbh
RND transporter {ECO:0000313|EMBL:EXF94477.1}; TaxID=1042209 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens HK44.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 60.9
  • Coverage: 488.0
  • Bit_score: 557
  • Evalue 2.50e-155
RND efflux system outer membrane lipoprotein similarity KEGG
DB: KEGG
  • Identity: 53.8
  • Coverage: 493.0
  • Bit_score: 504
  • Evalue 3.30e-140
  • rbh

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Taxonomy

Pseudomonas fluorescens → Pseudomonas → Pseudomonadales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1500
ATGACAGGCACACCTGCTCCGGGCTGGAGGTGGCTGGCCGCGGTGCTTGCCCTGGCCGGCACGGGCCTGTCGGCGGGCTGCATGGTCGGCCCCGACTTCGTGCGCCCGGCGCCTGCGCAGGTGGACAGCTACACGCGCGGTGCCCTGCCTGCGACGACCGAAGCCGGCGACGGGCGATCGCAGCGCTTCGGCCCGGCAGCGGAGCTTCCCGCGGACTGGTGGCGTCTCTTCGGATCGCCCGCGCTGGACGAGGCCGTGCGGCAGGCGCTGCAGCACAACCCGACGCTTCAATCGGCCGAGGCCAGCCTTCGCCAGAGCCAGGACGAACTTCGCGCGGGCCACGGCATCTTCTACCCGCAGCTCGACGCCTCCTTCGGCGCCACCCGCGCCCGTACGGCACCGGTCCTGCAGGGCTCCTCCGCCGCCGGCACGATCTACCAGGTGGTCACGCTCAGCGGTGCCATCAGCTATCCGCTCGATGTCTTCGGCGGCGAACGCCGCACCGTCGAGGGCCTGGCCGCGCAGGCGGAGAACCAGCGTTTCGTGGCGATGGCAGCCTACCTGGCGCTGGAGGCGAATCTGGTCCAGACGTGCGTTGCACGCGCCGCCTACGTCGCGCAAAGGCGCACGACGGAAGAACTGATCGCCCTGGAGCGCGACCAGTTGCACAGCATCGAGGCCCAGGTGCATGCCGGCACCGTGCCCTATGCCAACCAGTTGAGCCAGCTGAGCCTGATCGCCTCCAACCGGGCGCAGCTCGCCGCGCTGGCGCAGAAGATCAGCCAGGCCGACCATCTGCTGGCCGCCCTGCAGGGCGACACGCCGGCCGAGGCTGCGCTCCCCGACGTCGACATCGGGGAGCTGACGCTGCCGAGGGACCTGCCGCTCAGCCTCCCGTCGGAACTGGTGCGGCAGCGCCCGGACATTCTCGCGGCCGAAGCGCAGCTGCATGCGGCCAGCGCGGCCATCGGCGTGGCAACCGCGGCCATGTTTCCGAGCTTCAGCCTGAGCGCCGGGTACGGTGCCGCCAGCCCGCAACTCGCCAGTCTGCTGGCCGGCGGCTCCCGCTACTGGAGCCTCGCGCCTGCCGTCGCGCTGCCACTCCTGCACGGCGGCACGCTGCGAGCCAGGCGCCAGGCCGCGATCGACGCCCACGCCGCCCGGGAAGCCGACTACCGTCAGACGGTGCTCTCCGCATTCGAGCAGGTTGCCGATGCGCTGCGGGCGCTCGAGCACGACGCGCAGGCACTTCAGGCGCAGGCCGAGGCGAGATCATCGGCCGCCGATGCGCTGGCCCTGCAGCAGGCCGGCTATCGCGCGGGACTCGTGGCCTATGTCGACCTGCAGAATGCGGACATCCAGTTCCACGCCGCAAGTCTTTCCTACCTTTCGGCATTGGCGCAGCGCCATCAGGACACCGTCGCCCTGTTCGCGGCGCTCGGCGGAGGCTGGTGGAATGCCCCGTCATCCGGTGCCGGCGCGCGCGCCGGGCAGCCATGA
PROTEIN sequence
Length: 500
MTGTPAPGWRWLAAVLALAGTGLSAGCMVGPDFVRPAPAQVDSYTRGALPATTEAGDGRSQRFGPAAELPADWWRLFGSPALDEAVRQALQHNPTLQSAEASLRQSQDELRAGHGIFYPQLDASFGATRARTAPVLQGSSAAGTIYQVVTLSGAISYPLDVFGGERRTVEGLAAQAENQRFVAMAAYLALEANLVQTCVARAAYVAQRRTTEELIALERDQLHSIEAQVHAGTVPYANQLSQLSLIASNRAQLAALAQKISQADHLLAALQGDTPAEAALPDVDIGELTLPRDLPLSLPSELVRQRPDILAAEAQLHAASAAIGVATAAMFPSFSLSAGYGAASPQLASLLAGGSRYWSLAPAVALPLLHGGTLRARRQAAIDAHAAREADYRQTVLSAFEQVADALRALEHDAQALQAQAEARSSAADALALQQAGYRAGLVAYVDLQNADIQFHAASLSYLSALAQRHQDTVALFAALGGGWWNAPSSGAGARAGQP*