ggKbase home page

SCNpilot_cont_1000_p_scaffold_1067_1

Organism: SCNPILOT_EXPT_750_P_Variovorax_66_42

near complete RP 52 / 55 MC: 3 BSCG 51 / 51 ASCG 13 / 38 MC: 1
Location: comp(47..454)

Top 3 Functional Annotations

Value Algorithm Source
Putative AP endonuclease, family 2 n=1 Tax=Variovorax paradoxus B4 RepID=T1XIS7_VARPD similarity UNIREF
DB: UNIREF100
  • Identity: 92.3
  • Coverage: 130.0
  • Bit_score: 252
  • Evalue 3.30e-64
Variovorax paradoxus strain MEDvA23 contig_8, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ35778.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 93.8
  • Coverage: 130.0
  • Bit_score: 253
  • Evalue 1.20e-64
putative AP endonuclease, family 2 similarity KEGG
DB: KEGG
  • Identity: 92.3
  • Coverage: 130.0
  • Bit_score: 252
  • Evalue 1.00e-64

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Variovorax paradoxus → Variovorax → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 408
ATGAAGACAATCAAGGGTCCCGCCATTTTTCTCGCCCAGTTCGCGGGCGACACGGCACCGTTCGACACGCTCGACGGCATTGCCGGCTGGGCCGCCGGCCTGGGCTACAAGGGCGTGCAGATTCCCAGCTGGGACGCCCGCCTGTTCGACCTGAAGAAGGCCGCCGAAAGCAAGACCTACTGCGACGAAGTGAAGGGCACGCTGGCCGGGCACGGCCTGGAGATCACCGAACTCTCGACTCACCTGCAGGGCCAGCTGGTGGCGGTGCACCCGGCCTACGACGCGGGCTTCGACGGCTTCGCGGCGCCCGAAGTGCGCGGCGACCCGGTTCGGCGCCAGCAGTGGGCGGTGCAGCAGCTGCACTACGCGGCCAAGGTGACCTGCCCCCTTCCGCCGTGCCATTCATAA
PROTEIN sequence
Length: 136
MKTIKGPAIFLAQFAGDTAPFDTLDGIAGWAAGLGYKGVQIPSWDARLFDLKKAAESKTYCDEVKGTLAGHGLEITELSTHLQGQLVAVHPAYDAGFDGFAAPEVRGDPVRRQQWAVQQLHYAAKVTCPLPPCHS*