ggKbase home page

SCNpilot_cont_1000_p_scaffold_387_19

Organism: SCNPILOT_CONT_1000_P_Alphaproteobacteria_novel_41_6_7

near complete RP 52 / 55 BSCG 51 / 51 MC: 1 ASCG 10 / 38
Location: comp(19402..19653)

Top 3 Functional Annotations

Value Algorithm Source
RNA-binding protein Hfq n=1 Tax=uncultured bacterium RepID=K2DSR5_9BACT similarity UNIREF
DB: UNIREF100
  • Identity: 63.1
  • Coverage: 84.0
  • Bit_score: 111
  • Evalue 3.30e-22
RNA-binding protein Hfq {ECO:0000256|HAMAP-Rule:MF_00436, ECO:0000256|SAAS:SAAS00067493}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 63.1
  • Coverage: 84.0
  • Bit_score: 111
  • Evalue 4.60e-22
hfq; RNA-binding protein Hfq; K03666 host factor-I protein similarity KEGG
DB: KEGG
  • Identity: 64.5
  • Coverage: 76.0
  • Bit_score: 105
  • Evalue 9.70e-21

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

uncultured bacterium → Bacteria

Sequences

DNA sequence
Length: 252
ATGACTTTATCAAAGCAAAAAAACACTCTACAATATACTTTTCTAAATAAACTTCGAAAAGAAAAGGTGCCTGTCACTATTTTTTTGATAAATGGGGTCAAGCTTGAAGGCATTATTCCGTGGTTTGATAGTTTTTCTGTCTTGCTGAGAAGGGGTAATCAGCAGCAGCTTATCTATAAACATGCCATCTCAACCGTTTTTCCTATTAATCCTATTCCCATCTTTGACGAAGAAGGGACTTTAGAAGAATAG
PROTEIN sequence
Length: 84
MTLSKQKNTLQYTFLNKLRKEKVPVTIFLINGVKLEGIIPWFDSFSVLLRRGNQQQLIYKHAISTVFPINPIPIFDEEGTLEE*