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SCNpilot_cont_1000_p_scaffold_19239_2

Organism: SCNPILOT_EXPT_300_BF_Stenotrophomonas_69_97

near complete RP 51 / 55 MC: 2 BSCG 50 / 51 MC: 4 ASCG 13 / 38 MC: 2
Location: comp(2650..2814)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor RpoD n=1 Tax=Stenotrophomonas maltophilia D457 RepID=I0KT84_STEMA similarity UNIREF
DB: UNIREF100
  • Identity: 100.0
  • Coverage: 54.0
  • Bit_score: 110
  • Evalue 6.30e-22
RNA polymerase sigma factor RpoD; K03086 RNA polymerase primary sigma factor similarity KEGG
DB: KEGG
  • Identity: 100.0
  • Coverage: 54.0
  • Bit_score: 110
  • Evalue 2.00e-22
RNA polymerase sigma factor RpoD {ECO:0000256|HAMAP-Rule:MF_00963}; Sigma-70 {ECO:0000256|HAMAP-Rule:MF_00963}; TaxID=325777 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas axonopodis pv. vasculorum.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 100.0
  • Coverage: 54.0
  • Bit_score: 110
  • Evalue 8.80e-22

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Taxonomy

Xanthomonas axonopodis → Xanthomonas → Xanthomonadales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 165
ATGCGCTTCGGCATCGACATGAACACCGACCACACCCTGGAAGAGGTCGGCAAGCAGTTCGACGTCACCCGCGAGCGCATCCGCCAGATCGAGGCCAAGGCGCTGCGCAAGCTGCGTCATCCCAGCCGTTCCGAGCAGCTGCGCAGCTTCCTCGACATCGACTGA
PROTEIN sequence
Length: 55
MRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEQLRSFLDID*