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AMDSBA3_4_32 Annotations

Value Algorithm Source Identity Coverage Bit score Evalue Cross references
RNA polymerase sigma-70 subunit RpoD rbh KEGG
DB: KEGG
92.7 371.0 660 2.40e-187 sap:Sulac_2913
RNA polymerase sigma-70 subunit RpoD similarity KEGG
DB: KEGG
92.7 371.0 660 2.40e-187 sap:Sulac_2913
RNA polymerase principal sigma factor hrdB n=34 Tax=Streptomyces RepID=HRDB_STRGR (db=UNIREF evalue=4.4e-99 bit_score=367.1 identity=60.4 coverage=78.97574123989219) similarity UNIREF
DB: UNIREF
60.4 78.98 367 4.40e-99 sap:Sulac_2913
seg (db=Seg db_id=seg from=74 to=93) iprscan interpro
DB: Seg
null null null null sap:Sulac_2913
coiled-coil (db=Coil db_id=coil from=123 to=144 evalue=NA) iprscan interpro
DB: Coil
null null null null sap:Sulac_2913
seg (db=Seg db_id=seg from=282 to=293) iprscan interpro
DB: Seg
null null null null sap:Sulac_2913
coiled-coil (db=Coil db_id=coil from=292 to=320 evalue=NA) iprscan interpro
DB: Coil
null null null null sap:Sulac_2913
rbh rbh UNIREF
DB: UNIREF
null null null null sap:Sulac_2913
SIGMA70_1 (db=PatternScan db_id=PS00715 from=161 to=174 evalue=0.0 interpro_id=IPR000943 interpro_description=RNA polymerase sigma-70 factor GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) iprscan interpro
DB: PatternScan
null null null 0.0 sap:Sulac_2913
SIGMA70_2 (db=PatternScan db_id=PS00716 from=330 to=356 evalue=0.0 interpro_id=IPR000943 interpro_description=RNA polymerase sigma-70 factor GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) iprscan interpro
DB: PatternScan
null null null 0.0 sap:Sulac_2913
RpoD_Cterm: RNA polymerase sigma factor R (db=HMMTigr db_id=TIGR02393 from=133 to=370 evalue=6.6e-185 interpro_id=IPR012760 interpro_description=RNA polymerase sigma factor RpoD, C-terminal GO=Molecular Function: DNA binding (GO:0003677), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) iprscan interpro
DB: HMMTigr
null null null 6.60e-185 sap:Sulac_2913
Sigma2 domain of RNA polymerase sigma factors (db=superfamily db_id=SSF88946 from=98 to=207 evalue=6.6e-57 interpro_id=IPR013325 interpro_description=RNA polymerase sigma factor, region 2 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma fact iprscan interpro
DB: superfamily
null null null 6.60e-57 sap:Sulac_2913
no description (db=Gene3D db_id=G3DSA:1.10.601.10 from=101 to=206 evalue=5.3e-56) iprscan interpro
DB: Gene3D
null null null 5.30e-56 sap:Sulac_2913
sigma70-ECF: RNA polymerase sigma factor, (db=HMMTigr db_id=TIGR02937 from=132 to=360 evalue=4.9e-32 interpro_id=IPR014284 interpro_description=RNA polymerase sigma-70 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016 iprscan interpro
DB: HMMTigr
null null null 4.90e-32 sap:Sulac_2913
SIGMA70FCT (db=FPrintScan db_id=PR00046 from=345 to=356 evalue=6.2e-32 interpro_id=IPR000943 interpro_description=RNA polymerase sigma-70 factor GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) iprscan interpro
DB: FPrintScan
null null null 6.20e-32 sap:Sulac_2913
SIGMA70FCT (db=FPrintScan db_id=PR00046 from=185 to=193 evalue=6.2e-32 interpro_id=IPR000943 interpro_description=RNA polymerase sigma-70 factor GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) iprscan interpro
DB: FPrintScan
null null null 6.20e-32 sap:Sulac_2913
SIGMA70FCT (db=FPrintScan db_id=PR00046 from=309 to=321 evalue=6.2e-32 interpro_id=IPR000943 interpro_description=RNA polymerase sigma-70 factor GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) iprscan interpro
DB: FPrintScan
null null null 6.20e-32 sap:Sulac_2913
SIGMA70FCT (db=FPrintScan db_id=PR00046 from=161 to=174 evalue=6.2e-32 interpro_id=IPR000943 interpro_description=RNA polymerase sigma-70 factor GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) iprscan interpro
DB: FPrintScan
null null null 6.20e-32 sap:Sulac_2913
SIGMA70FCT (db=FPrintScan db_id=PR00046 from=330 to=345 evalue=6.2e-32 interpro_id=IPR000943 interpro_description=RNA polymerase sigma-70 factor GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) iprscan interpro
DB: FPrintScan
null null null 6.20e-32 sap:Sulac_2913
(db=HMMPfam db_id=PF04539 from=216 to=292 evalue=9.9e-31 interpro_id=IPR007624 interpro_description=RNA polymerase sigma-70 region 3 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) iprscan interpro
DB: HMMPfam
null null null 9.90e-31 sap:Sulac_2913
Sigma3 and sigma4 domains of RNA polymerase sigma factors (db=superfamily db_id=SSF88659 from=267 to=370 evalue=2.1e-29 interpro_id=IPR013324 interpro_description=RNA polymerase sigma factor, region 3/4 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Funct iprscan interpro
DB: superfamily
null null null 2.10e-29 sap:Sulac_2913
no description (db=Gene3D db_id=G3DSA:1.10.10.10 from=291 to=369 evalue=1.5e-26 interpro_id=IPR011991 interpro_description=Winged helix-turn-helix transcription repressor DNA-binding) iprscan interpro
DB: Gene3D
null null null 1.50e-26 sap:Sulac_2913
Sigma3 and sigma4 domains of RNA polymerase sigma factors (db=superfamily db_id=SSF88659 from=210 to=284 evalue=2.2e-25 interpro_id=IPR013324 interpro_description=RNA polymerase sigma factor, region 3/4 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Funct iprscan interpro
DB: superfamily
null null null 2.20e-25 sap:Sulac_2913
(db=HMMPfam db_id=PF04542 from=137 to=207 evalue=7.9e-24 interpro_id=IPR007627 interpro_description=RNA polymerase sigma-70 region 2 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) iprscan interpro
DB: HMMPfam
null null null 7.90e-24 sap:Sulac_2913
(db=HMMPfam db_id=PF00140 from=98 to=134 evalue=1.7e-20 interpro_id=IPR009042 interpro_description=RNA polymerase sigma-70 region 1.2 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) iprscan interpro
DB: HMMPfam
null null null 1.70e-20 sap:Sulac_2913
(db=HMMPfam db_id=PF04545 from=305 to=358 evalue=5.0e-20 interpro_id=IPR007630 interpro_description=RNA polymerase sigma-70 region 4 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) iprscan interpro
DB: HMMPfam
null null null 5.00e-20 sap:Sulac_2913
no description (db=Gene3D db_id=G3DSA:1.10.10.10 from=210 to=261 evalue=9.4e-19 interpro_id=IPR011991 interpro_description=Winged helix-turn-helix transcription repressor DNA-binding) iprscan interpro
DB: Gene3D
null null null 9.40e-19 sap:Sulac_2913
(db=HMMPfam db_id=PF03979 from=13 to=83 evalue=4.9e-14 interpro_id=IPR007127 interpro_description=RNA polymerase sigma factor 70, region 1.1 GO=Molecular Function: DNA binding (GO:0003677), Biological Process: regulation of transcription, DNA-dependent (GO:0006355)) iprscan interpro
DB: HMMPfam
null null null 4.90e-14 sap:Sulac_2913
RNA polymerase sigma factor n=2 Tax=Sulfobacillus acidophilus RepID=F8I937_SULAT similarity UNIREF
DB: UNIREF90
93.0 null 661 1.20e-187 sap:Sulac_2913
RNA polymerase sigma factor SigA {ECO:0000256|HAMAP-Rule:MF_00963}; TaxID=1051632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XVII. Incertae Sedis; Sulfobacillus.;" UNIPROT
DB: UniProtKB
92.7 371.0 660 1.20e-186 F8I937_SULAT