ggKbase home page

SCNpilot_cont_1000_p_scaffold_37_205

Organism: SCNPILOT_CONT_1000_P_Sphingobacteriales_46_16

near complete RP 53 / 55 MC: 1 BSCG 51 / 51 ASCG 13 / 38
Location: comp(216620..217210)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TL14_NIAKG similarity UNIREF
DB: UNIREF100
  • Identity: 55.2
  • Coverage: 172.0
  • Bit_score: 183
  • Evalue 1.60e-43
ECF subfamily RNA polymerase sigma-24 subunit; K03088 RNA polymerase sigma-70 factor, ECF subfamily similarity KEGG
DB: KEGG
  • Identity: 55.2
  • Coverage: 172.0
  • Bit_score: 183
  • Evalue 5.00e-44
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:AEW00853.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 55.2
  • Coverage: 172.0
  • Bit_score: 183
  • Evalue 2.20e-43

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Niastella koreensis → Niastella → Sphingobacteriales → Sphingobacteriia → Bacteroidetes → Bacteria

Sequences

DNA sequence
Length: 591
ATGACGATAACAGACGATGAGGCCTGCAATACCGCTCATGATGCAAGGTCTAGTACTATTGTTTTCGAACAATTATTCCGTGAGCATTTCGAGCGGCTATATAAATACGCTTATACCATAGTCAAAAATGAGACTATTGCCGAAGAGATAGTACAACAGGTCTTTTCCCGGTTATGGGAGATAAAAGATAGTGTGCAGTGGGGAGGGCAGATCGCAGCTTATTTGTATAAAGCTACTTACACCAATGCACTGAACATATTAAAGCACGATAAAGTAAAGCACGACTATCGCATGCACATATTGGCACAGCATAGCGAGACGGCCAATACCACAGATCCTGCAGAGCTTAAAGAACTGGAAGAAAAAATAGTTATGGCACTTAATGCGCTGCCTAACCAGTGCCGGACGGTCTTTCATATGAGCAGGTTTGAGGGTTTAAAGTATAAGGATATTGCTGCCCGCCTGGGGATCTCTGTAAAAACAGTAGAAAACCACATGTGCAAAGCCCTGGAATTTTTGCGAAAAAAACTCGCAGATTACCTGCCTGTGCTCTGTGTGCTGTTCATAAATATTAAAAACTGGATGCCGTGA
PROTEIN sequence
Length: 197
MTITDDEACNTAHDARSSTIVFEQLFREHFERLYKYAYTIVKNETIAEEIVQQVFSRLWEIKDSVQWGGQIAAYLYKATYTNALNILKHDKVKHDYRMHILAQHSETANTTDPAELKELEEKIVMALNALPNQCRTVFHMSRFEGLKYKDIAARLGISVKTVENHMCKALEFLRKKLADYLPVLCVLFINIKNWMP*