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SCNpilot_cont_1000_p_scaffold_511_26

Organism: SCNPILOT_CONT_1000_P_Sphingobacteriales_46_16

near complete RP 53 / 55 MC: 1 BSCG 51 / 51 ASCG 13 / 38
Location: comp(27487..28035)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PB29_CHIPD similarity UNIREF
DB: UNIREF100
  • Identity: 51.6
  • Coverage: 184.0
  • Bit_score: 177
  • Evalue 1.40e-41
ECF subfamily RNA polymerase sigma-24 subunit; K03088 RNA polymerase sigma-70 factor, ECF subfamily similarity KEGG
DB: KEGG
  • Identity: 51.6
  • Coverage: 184.0
  • Bit_score: 177
  • Evalue 4.40e-42
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated similarity UNIPROT
DB: UniProtKB
  • Identity: 52.2
  • Coverage: 178.0
  • Bit_score: 184
  • Evalue 1.60e-43

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Taxonomy

RIFOXYD2_FULL_Sphingobacteria_35_12_curated → Sphingobacteria → Bacteroidetes → Bacteria

Sequences

DNA sequence
Length: 549
TTGCCTGCCACAAATACATATAGCGAAGAAGAGTTAGTGCTCCTGCTGCAGCAGAGGAGTGAGGCTGCTTTTAACTACTTGTACCAAAATTATGCAGCTGTGCTATATGGTATAGTGCGGAAAACGATATTTGATGAACAGACAGCCCAGGATGTGCTGCAGGAGGCATTTGTCAAAATATGGAACAATATAGATAAATACGACCCTCAAAAAGGACGTATCTATACCTGGATGATCAACATAACCCGGAATGCCGCGATAGATAAACTGCGCTCGAAAGGCGAAGTTATGAAAAGCAAAATCCGTACAGGCGAAGAAATCGTAAATAATATAGGACAAAGCCTGAAGACAGAGCAGGTTACAGATACCATCGGCCTGCGCCAGGTAGTTGGAGGACTGGAACCGGGTTATAAGGCTATTGTGGAACTGGCATATTTCAAAGGATTTACTTTAGATGAGATATCAAAAACACTTGATATACCGCTGGGTACGGTTAAAACCCGTATGCGGCATGCCATAAAATTGTTAAGAGAACATTTTAAACAATAA
PROTEIN sequence
Length: 183
LPATNTYSEEELVLLLQQRSEAAFNYLYQNYAAVLYGIVRKTIFDEQTAQDVLQEAFVKIWNNIDKYDPQKGRIYTWMINITRNAAIDKLRSKGEVMKSKIRTGEEIVNNIGQSLKTEQVTDTIGLRQVVGGLEPGYKAIVELAYFKGFTLDEISKTLDIPLGTVKTRMRHAIKLLREHFKQ*