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AMDSBA4_13_23 Annotations

Value Algorithm Source Identity Coverage Bit score Evalue Cross references
RuBisCO operon transcriptional regulator similarity KEGG
DB: KEGG
50.9 273.0 259 1.80e-66 tro:trd_0497
Transcriptional regulator, LysR family n=1 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MLK1_9BACT (db=UNIREF evalue=1.7e-43 bit_score=182.2 identity=35.3 coverage=86.03174603174604) similarity UNIREF
DB: UNIREF
35.3 86.03 182 1.70e-43 tro:trd_0497
(db=HMMPfam db_id=PF03466 from=95 to=299 evalue=2.7e-50 interpro_id=IPR005119 interpro_description=LysR, substrate-binding) iprscan interpro
DB: HMMPfam
null null null 2.70e-50 tro:trd_0497
Periplasmic binding protein-like II (db=superfamily db_id=SSF53850 from=89 to=308 evalue=1.4e-46) iprscan interpro
DB: superfamily
null null null 1.40e-46 tro:trd_0497
"Winged helix" DNA-binding domain (db=superfamily db_id=SSF46785 from=4 to=119 evalue=2.2e-26) iprscan interpro
DB: superfamily
null null null 2.20e-26 tro:trd_0497
no description (db=Gene3D db_id=G3DSA:1.10.10.10 from=8 to=94 evalue=1.6e-21 interpro_id=IPR011991 interpro_description=Winged helix-turn-helix transcription repressor DNA-binding) iprscan interpro
DB: Gene3D
null null null 1.60e-21 tro:trd_0497
(db=HMMPfam db_id=PF00126 from=12 to=68 evalue=1.7e-21 interpro_id=IPR000847 interpro_description=Transcription regulator HTH, LysR GO=Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: regulation of transcription, DNA-dependent (GO:0006355)) iprscan interpro
DB: HMMPfam
null null null 1.70e-21 tro:trd_0497
no description (db=Gene3D db_id=G3DSA:3.40.190.10 from=172 to=264 evalue=1.1e-18) iprscan interpro
DB: Gene3D
null null null 1.10e-18 tro:trd_0497
HTHLYSR (db=FPrintScan db_id=PR00039 from=46 to=57 evalue=5.3e-09 interpro_id=IPR000847 interpro_description=Transcription regulator HTH, LysR GO=Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: regulation of transcription, DNA-dependent (GO:0006355)) iprscan interpro
DB: FPrintScan
null null null 5.30e-09 tro:trd_0497
HTHLYSR (db=FPrintScan db_id=PR00039 from=25 to=36 evalue=5.3e-09 interpro_id=IPR000847 interpro_description=Transcription regulator HTH, LysR GO=Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: regulation of transcription, DNA-dependent (GO:0006355)) iprscan interpro
DB: FPrintScan
null null null 5.30e-09 tro:trd_0497
HTHLYSR (db=FPrintScan db_id=PR00039 from=36 to=46 evalue=5.3e-09 interpro_id=IPR000847 interpro_description=Transcription regulator HTH, LysR GO=Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: regulation of transcription, DNA-dependent (GO:0006355)) iprscan interpro
DB: FPrintScan
null null null 5.30e-09 tro:trd_0497
HTH_LYSR (db=ProfileScan db_id=PS50931 from=8 to=65 evalue=28.667 interpro_id=IPR000847 interpro_description=Transcription regulator HTH, LysR GO=Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: regulation of transcription, DNA-dependent (GO:0006355)) iprscan interpro
DB: ProfileScan
null null null 2.87e+01 tro:trd_0497
Transcriptional regulator, LysR family {ECO:0000313|EMBL:EFH86689.1}; TaxID=485913 species="Bacteria; Chloroflexi; Ktedonobacteria; Ktedonobacterales; Ktedonobacteraceae; Ktedonobacter.;" source="Kted UNIPROT
DB: UniProtKB
46.7 291.0 262 7.90e-67 D6TLN9_9CHLR