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SCNpilot_expt_500_bf_scaffold_629_15

Organism: SCNPILOT_EXPT_500_BF_STEP10_Sphingopyxis_65_8

near complete RP 50 / 55 BSCG 50 / 51 ASCG 11 / 38
Location: 11131..12585

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma-54 factor n=1 Tax=Sphingopyxis sp. MC1 RepID=N9URN0_9SPHN similarity UNIREF
DB: UNIREF100
  • Identity: 99.0
  • Coverage: 484.0
  • Bit_score: 931
  • Evalue 3.30e-268
  • rbh
RNA polymerase sigma-54 factor {ECO:0000256|PIRNR:PIRNR000774}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 99.0
  • Coverage: 484.0
  • Bit_score: 931
  • Evalue 4.70e-268
RNA polymerase factor sigma-54; K03092 RNA polymerase sigma-54 factor similarity KEGG
DB: KEGG
  • Identity: 88.0
  • Coverage: 484.0
  • Bit_score: 819
  • Evalue 7.60e-235
  • rbh

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Taxonomy

Sphingopyxis sp. MC1 → Sphingopyxis → Sphingomonadales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1455
ATGGCGTTGGGTCCGCGCCTCGATTTACGCCAGTCGCAATCGCTGGTGATGACGCCGCAGCTGCAGCAGGCGATCAAGCTGCTCGCGCTGTCGAACCTCGAACTCGAAGCCTATCTGGCCGAGGCGCTCGAAGGCAATCCGCTGCTCGATGCGACGCCGGGCGACCGCGAACCCGGCGATGACGAGGGGGGCGACGAAGCGCCGCCGTCCGACGGCCCGCCCGCCGACACCGACCTGGCGCTGTCGTCCGAAGCGGGCACCGCCGACGATCTCGACGTCGATTTTGCTGAGGAACGGTTCCACCACGATAGCGCGAGCGATTCGGTGGGGCTGTCGGGCGACGGCGAGGGCATCGATTTCGACAGCTTCGCGGGCGACGACGGCACGCTTTACGACCATCTGCTCGCCCAGGTCGGCGAGCGATTCTCGGGCATCGAGGCGATGGTCGCCGAACAGATCGTCGCGCTGATCGACGGGGCGGGCTATCTGCGCGCCGATCTCGCCGAGCTGGCGCAGCGGCTCGGCGTGCCGCTCGCGCTGGTCGAGGCGGTGCTTGTGGGCGTCCAGAGCTTCGACCCTTCGGGCGTCGGCGGCCGCGACCTTGCCGAATGTATCGCGATCCAGGCGCGAGAGGCCGACCGCTACGATCCTGCCATGGCGACGATGATCGCGCATCTCGACCTCGTCGCAAAGGGCGCTTTCCCGCAGCTCAAGCGCATCTGCGGCGTCGACGACGAAGATCTGGCCGACATGATCCGCGAACTGCGCGGCTACGACCCCAAGCCCGGCCTGCGCTTCGGCGGCACCGCGATGCAGGCGGTGGTGCCCGACCTTTATGTCCGCCAGACCGCGAAGGGCTGGGCGGTAGAGGGAAACAGCGGCACGCTTCCGCGGTTGCTCGTCAATCGCCGCTATTATACCGAACTGGCAAAGGATGCCGCGGCCAAGAGCAAGGCGTGGCTGTCCGAACAGCTCGCGGGGGCCAACTGGCTGGTGCGCGCGCTCGACCAGCGCCAGCGCACGATCGTCAAGGTCGCGAGCGAGATTGTGAAGCAGCAAGAGGGCTTTTTCCTCCACGGCGTCGCGCATATGCGCCCGCTGACGCTGCGGCAGGTGGCCGAGGCGATCGGGATGCACGAATCGACCGTCAGCCGCGTGACCAGCAACAAATATCTATCGTGCGCGCGCGGCCTGTTCGAGCTCAAATATTTCTTCTCGTCGGGAATTTCGGCGACAGAGGGCGACGGCGCGGTGTCGGCCGAAGCGGTGAAGAGCCGGATCAAGGCGATGATCGAGGCCGAAGATCCCAAGGCGATCCTGTCCGACGAGACGATCGCACAGAAACTCTCGGCCGAAGGCCACGACATCGCGCGGCGCACCGTGGTCAAATATCGCGAGGCAATGGGCTATGGCTCGTCGGTGCAAAGGCGACGGCAGAAGGCGCTGGCGGGATAA
PROTEIN sequence
Length: 485
MALGPRLDLRQSQSLVMTPQLQQAIKLLALSNLELEAYLAEALEGNPLLDATPGDREPGDDEGGDEAPPSDGPPADTDLALSSEAGTADDLDVDFAEERFHHDSASDSVGLSGDGEGIDFDSFAGDDGTLYDHLLAQVGERFSGIEAMVAEQIVALIDGAGYLRADLAELAQRLGVPLALVEAVLVGVQSFDPSGVGGRDLAECIAIQAREADRYDPAMATMIAHLDLVAKGAFPQLKRICGVDDEDLADMIRELRGYDPKPGLRFGGTAMQAVVPDLYVRQTAKGWAVEGNSGTLPRLLVNRRYYTELAKDAAAKSKAWLSEQLAGANWLVRALDQRQRTIVKVASEIVKQQEGFFLHGVAHMRPLTLRQVAEAIGMHESTVSRVTSNKYLSCARGLFELKYFFSSGISATEGDGAVSAEAVKSRIKAMIEAEDPKAILSDETIAQKLSAEGHDIARRTVVKYREAMGYGSSVQRRRQKALAG*