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SCNpilot_expt_500_bf_scaffold_5701_2

Organism: SCNPILOT_EXPT_500_BF_STEP10_Rhodanobacter_fragment_67_8

partial RP 0 / 55 BSCG 0 / 51 ASCG 0 / 38
Location: comp(1527..1814)

Top 3 Functional Annotations

Value Algorithm Source
RNA-binding protein Hfq n=1 Tax=Rhodanobacter denitrificans RepID=I4WV78_9GAMM similarity UNIREF
DB: UNIREF100
  • Identity: 92.6
  • Coverage: 95.0
  • Bit_score: 178
  • Evalue 2.50e-42
RNA-binding protein Hfq {ECO:0000256|HAMAP-Rule:MF_00436, ECO:0000256|SAAS:SAAS00067493}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 90.8
  • Coverage: 98.0
  • Bit_score: 178
  • Evalue 4.60e-42
RNA-binding protein Hfq similarity KEGG
DB: KEGG
  • Identity: 91.6
  • Coverage: 95.0
  • Bit_score: 177
  • Evalue 2.30e-42

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Taxonomy

Rhodanobacter thiooxydans → Rhodanobacter → Xanthomonadales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 288
ATGTCCAAGGGGCAGTCGTTGCAGGATCCGTTTTTGAATGCTTTGCGGCGCGAGCGCGTGCCGGTGGCCATCTACCTGGTCAACGGCATCAAGCTGCAGGGTACGGTCGAATCGTTCGACCAGTTCGTGGTGTTGCTGCGCAACCAGGTGAGTCAGATGGTGTACAAGCACGCCATTTCCACCGTGGTGCCGAGCCGCAACGTGCGCATCGGCAATGGCCACGACGGCCATGAGGGCCACGACCATCATGCCGACGCGCCGGCCGCATCCACCGACGCGGACGCTTGA
PROTEIN sequence
Length: 96
MSKGQSLQDPFLNALRRERVPVAIYLVNGIKLQGTVESFDQFVVLLRNQVSQMVYKHAISTVVPSRNVRIGNGHDGHEGHDHHADAPAASTDADA*