ggKbase home page

SCNpilot_expt_1000_bf_scaffold_7919_16

Organism: SCNpilot_expt_1000_bf_UNK

megabin RP 54 / 55 MC: 53 BSCG 51 / 51 MC: 51 ASCG 27 / 38 MC: 18
Location: 15266..18298

Top 3 Functional Annotations

Value Algorithm Source
transcription-repair coupling factor (EC:3.6.1.-); K03723 transcription-repair coupling factor (superfamily II helicase) [EC:3.6.4.-] similarity KEGG
DB: KEGG
  • Identity: 79.7
  • Coverage: 943.0
  • Bit_score: 1488
  • Evalue 0.0
Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969}; Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969};; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969};; TaxID=702113 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. PP1Y.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 79.7
  • Coverage: 943.0
  • Bit_score: 1488
  • Evalue 0.0
Transcription-repair-coupling factor n=1 Tax=Novosphingobium sp. PP1Y RepID=F6IG37_9SPHN similarity UNIREF
DB: UNIREF100
  • Identity: 79.7
  • Coverage: 943.0
  • Bit_score: 1488
  • Evalue 0.0

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Novosphingobium sp. PP1Y → Novosphingobium → Sphingomonadales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 3033
ATGCCCGATCTCAACCGCATCCTGTCCGCCAAGTCCCCGCTGACCCTGGCTTCCGTCGCCCGCGGCGCGCAGCCGCTGGTGCTGGCCGACCTGGCGCGCGCCGCCCAAGCCGCATCGAAGGGGGGCCGCGCCCTGTTCATCGCGCCGGACGAGGCGGCGATGCGCGGCGTCAGCGACGCCGCCGCCTTCTTCGCGCCCGAGCTGGAGGTGATCGAGTTCCCGGCCTGGGACTGCCTGCCCTACGACCGCGCCAGCCCCGCGCTCTCGGTCAGCGCCCGGCGGCTCGCCGCGCTGCACCGGCTGCAAGGCCAGGCCGGCGGCCCACAGCTCGTCGTCACCACGATCAACGCCGTGCTCCAGCGCGTGCTCACCCCGTTCCGCATCCGCGAATCGGTGCGACTGCTCAAGCCCGGCATGGAGATCGGCCGCGAGAGCCTGATCGCCCTGCTCCAGCGCCAGGGCTATTCGCGCACCGACACGGTGGTCGATGCCGGCGAGTACGCGGTGCGCGGCTCGATCTTCGACATCTTCCCCTCGGGGCTGGACCAGGGCCTGCGCCTCGACTTCTTCGGCGACGAGCTGGAGACGCTGCGCCTGTTCGATCCCAACAGCCAGCGCTCGACCGGCACGATTTCCGAGCACCTGCTGCTCCCCGCCAGCGAGGCCCTGATCGACGACGAATCGGTCAAGCGCTTCCGCAGCCGCTACCGCGAGCTGTCCGGCGCCACCGCGACCTCGGACCCGCNNNNNNNNNNNNNNNNCGGCATGGAGCACTGGCTGCCGCTGTTCGAGGACCGGGTCGTCACCCTGTTCGATCACCTCGCCCCGGGCGACCTGGCGGTGATCGACAGCGCGGCGCTGGGCGCGGCCGACGAGCGGCTGGGCGACGTGGCCGACTATTTCGCGGCGCGCAGCGACACCTCGGGCAAGGCCCCCGGCTCCTACCGCCCGTTGCAGCCCGACGCGCTCTACCTGACCCGCGAGGAGCTGGACGCCCGGCTTTCAGGCTGGCCGATCCATCGCACCGAGATCTTCGCCCAGCCCGACAGCGAGCGGATCGTCGACTTCGGCTTCTCCGGCGGCCGCGACTTCGCGCCGGAGCGGGCGCGCGGCGACAACGTCTATGAAGCGGCGGCGCAGTACCTTTCGGGCCAGGCCAAACGCGGCCGCAAGACCCTGATCGCCGCCTATTCGGTCGGCAGCCGGGCGCGCCTCGCCGCGATTCTGGGTGAAGCAGCGAAACCCGCCCCCGTGCTGGCCGACAACTGGCAGGAAGCGCTCGGCCTCGCGGCAAAAGGCGCCCCGGTCGCCCTCGTCCTCCCACTCGAAACCGGCTTCGCCAACGACCAGCTCGAGATCGTCACCGAGCAGGACATTCTCGGCGATCGCCTGGTCCGCCGCAAGAAGCGCCGCAAGGACGCCGACGCCTTCCTCGCCGAACTGTCCGCCCTGACGCCGGGCGACCTCGTGGTCCACATGGACCACGGCATCGGCCGCTACGAGGGGCTCCAGTCGATCCCCGTGGGCCAGAGCCCGCACGACTGCGTGATGCTGACCTATGCCGGCGGCGACAAGCTCTACATCCCGGTCGAGAACCTGGAGGTCCTCTCCCGCTACGGCAGCGGCGAGGAAGGCGTCGCGCTCGACCGGCTCGGCGGCGAGGCCTGGCAGAAGCGCAAGGCCCGGCTCAAGGAGCGCATCCGCGAGATCGCCGGGGAACTGCTCAAGACCGCCGCCCAGCGCGCCCTGCGCCAGGCGCCGGTCCTGCTGCCCGAGCCGGCCAGCTACGATCCCTTCGTCGACCGCTTTCCCTGGCAGGAAACCGACGACCAGGACCGCGCGATCGACGACGTGCTGGCCGATCTGGCCGAGGGCAAGCCGATGGACCGCCTGGTCTGCGGCGACGTCGGCTTCGGCAAGACCGAGGTCGCCCTGCGCGCCGCCTTCGTCGCGGCGATGGGCGGGCAGCAGGTCGCGGTCGTCGCCCCGACCACCCTGCTCGCGCGCCAGCACTATTCGGGCTTCGTCGAGCGCTTCGCCGGCTTCCCGCTGAATGTCGGCCGCCTCTCCCGCCTGGTGCCCGAGAAGGAGGCCAAGGCGACCCGCGAGGGCCTGGCCGAGGGCACGGTCGACATCGTGATCGGCACCCACGCGATCCTGTCCAAGAGCGTGAAGTTCAAGCGGCTCGGGCTGGTGATCGTCGACGAGGAGCAGCGCTTCGGCGTCACGCACAAGGAGAAGCTCAAGCAGCTTCGCACCGACGTCCACGTCCTGACCCTCACCGCCACGCCGATCCCGCGCACCTTGCAGATGGCCATGTCCGGCCTGCGCGAGCTTTCCACCATCCAGACCCCGCCGGCCGACCGCCTCGCGGGGCGGACCTACGTGATGGAATGGGACGACATGGTGATGCGCGAGGCCCTGCTCCGCGAGCACCACCGCGGCGGGCAGAGCTTCATCGTCGTCCCCCGCATCGCCGACATGGCCGAGGTCGAGGACTGGCTGCGCAAGACCGTGCCCGAGGTCCGCTTCGTCACCGCTCATGGCCAGATGAGCGCCGGCGAGGTCGAGGAGCGGATGAGCGCCTTTTACGAGAAGAAGTACGAGGTGCTGCTCTCGACCACGATCATCGAGAGCGGGCTCGACATCCCGAGCGCCAACACGATGATCATCCACCGCGCCGACCGCTTCGGCCTGGCCCAGCTCTACCAGCTTCGCGGGCGGGTCGGACGCTCGAAGCTGCGGGCCTATGCCTACCTGACCACGCCGTCCGACCAGCAGCTTTCCGAAGTGGCGGNNNNNNNNNNNNNNNNNNGGGCGCCGGGTTCCAGCTCGCCAGCCACGACCTCGACATCCGCGGCGCGGGCAATCTGCTCGGCGACGAGCAGTCGGGCCATATCCGCGAGGTCGGCTTCGAGCTCTACCAGTCGATGCTGGAGGACGCGATCCTCGCCGCCAAGGCCGGCGACATCGGCCTCGCCAAGGAACGCTCGGCGCTCTCCCCGCAGATCACCGTCGACGCGCCGATCATGA
PROTEIN sequence
Length: 1011
MPDLNRILSAKSPLTLASVARGAQPLVLADLARAAQAASKGGRALFIAPDEAAMRGVSDAAAFFAPELEVIEFPAWDCLPYDRASPALSVSARRLAALHRLQGQAGGPQLVVTTINAVLQRVLTPFRIRESVRLLKPGMEIGRESLIALLQRQGYSRTDTVVDAGEYAVRGSIFDIFPSGLDQGLRLDFFGDELETLRLFDPNSQRSTGTISEHLLLPASEALIDDESVKRFRSRYRELSGATATSDPXXXXXXGMEHWLPLFEDRVVTLFDHLAPGDLAVIDSAALGAADERLGDVADYFAARSDTSGKAPGSYRPLQPDALYLTREELDARLSGWPIHRTEIFAQPDSERIVDFGFSGGRDFAPERARGDNVYEAAAQYLSGQAKRGRKTLIAAYSVGSRARLAAILGEAAKPAPVLADNWQEALGLAAKGAPVALVLPLETGFANDQLEIVTEQDILGDRLVRRKKRRKDADAFLAELSALTPGDLVVHMDHGIGRYEGLQSIPVGQSPHDCVMLTYAGGDKLYIPVENLEVLSRYGSGEEGVALDRLGGEAWQKRKARLKERIREIAGELLKTAAQRALRQAPVLLPEPASYDPFVDRFPWQETDDQDRAIDDVLADLAEGKPMDRLVCGDVGFGKTEVALRAAFVAAMGGQQVAVVAPTTLLARQHYSGFVERFAGFPLNVGRLSRLVPEKEAKATREGLAEGTVDIVIGTHAILSKSVKFKRLGLVIVDEEQRFGVTHKEKLKQLRTDVHVLTLTATPIPRTLQMAMSGLRELSTIQTPPADRLAGRTYVMEWDDMVMREALLREHHRGGQSFIVVPRIADMAEVEDWLRKTVPEVRFVTAHGQMSAGEVEERMSAFYEKKYEVLLSTTIIESGLDIPSANTMIIHRADRFGLAQLYQLRGRVGRSKLRAYAYLTTPSDQQLSEVAXXXXXXXAPGSSSPATTSTSAARAICSATSSRAISARSASSSTSRCWRTRSSPPRPATSASPRNARRSPRRSPSTRRS*