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SCNpilot_expt_1000_bf_scaffold_227_20

Organism: SCNPILOT_EXPT_300_BF_Sphingobacteriia_47_13

near complete RP 53 / 55 MC: 1 BSCG 50 / 51 ASCG 11 / 38
Location: 19411..20361

Top 3 Functional Annotations

Value Algorithm Source
Transcriptional regulator, LysR family n=1 Tax=Runella slithyformis (strain ATCC 29530 / DSM 19594 / LMG 11500 / NCIMB 11436 / LSU 4) RepID=F8ELI3_RUNSL similarity UNIREF
DB: UNIREF100
  • Identity: 50.0
  • Coverage: 298.0
  • Bit_score: 316
  • Evalue 2.50e-83
  • rbh
LysR family transcriptional regulator similarity KEGG
DB: KEGG
  • Identity: 50.0
  • Coverage: 298.0
  • Bit_score: 316
  • Evalue 8.00e-84
  • rbh
Transcriptional regulator, LysR family {ECO:0000313|EMBL:AEI47374.1}; TaxID=761193 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Runella.;" source="Runella slithyformis (strain ATCC 29530 / DSM 19594 / LMG 11500 /; NCIMB 11436 / LSU 4).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 50.0
  • Coverage: 298.0
  • Bit_score: 316
  • Evalue 3.60e-83

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Taxonomy

Runella slithyformis → Runella → Cytophagales → Cytophagia → Bacteroidetes → Bacteria

Sequences

DNA sequence
Length: 951
ATGGCCGAAGCTTCGGCCCGAAGTATCGGGCGGCTGTTTAACTTACCTTCCCGTATGCGCGATTTCCGTTTAAAAGTATTTCAGGCCGTAGCCGCTCATCTCAGCTTTACCAAAGCCGCAGCAGAGCTTTTCATCACACAACCTGCCGTTACCAGGCATATCCGCGAGTTGGAAGAGGAACTCGGCGTTAGCTTATTTGAACGCAAAGCCAACCGCGTTCAACTTACGCAGGCGGGCGACATTCTCCTTGCACATGCGGGACGCGTGTCTGACATCTACAAACAGATCGATTTCGATATCAACCAGCTTCGTCAACGGTTTGCCGGCGCGCTGCAACTCGGCGCCAGCACCACGATCGGGCAATACGTGTTGCCCTCGATGCTTGCCGGATTTTATCAGGCCTTTCCCGATGTAAAGCTTTCGTTACTCAACGGCAATACACAACAAATAGAAGCCGCACTGCTCGATAAAAAGATCGAGCTCGGTTTTGTAGAAGGCAAAACAAGAAACACCCAACTCCGGTACACAGCTTTCCAGGAAGATGAACTGGTAGTTGTTGCGCATGCGCAACAACCTTTAGCCAAACAGGCTTTCCTGTCGCTGAAACAACTGGCCGCTTTGCCATTGGTGTTGCGGGAACGTGGCTCCGGTAGCCTGGAAGTGGTGGAGCATGCACTGGCGTCGCATGATATGCGGCTCGATAACATGAACCTTGTGATGCATATCGGCAGTACGGAAGGCATTAAATCTTTTCTGCGTCATACCAATTGCCTCGGCATCGTGCCGGTGGCAGCTTTGCAGCCGGAATTGGTCGGGAAAGAATTCCGGATCATTTCAGTGAAAGGATTGTCTGTCCCACGTACTTTCTATTTTGTTCACCTGCAGGGCAAACCTTCCGGTTTGTCTGCCACACTTCTTCAGTTTATCCGTAAACGTTATAACAGAAAGTGA
PROTEIN sequence
Length: 317
MAEASARSIGRLFNLPSRMRDFRLKVFQAVAAHLSFTKAAAELFITQPAVTRHIRELEEELGVSLFERKANRVQLTQAGDILLAHAGRVSDIYKQIDFDINQLRQRFAGALQLGASTTIGQYVLPSMLAGFYQAFPDVKLSLLNGNTQQIEAALLDKKIELGFVEGKTRNTQLRYTAFQEDELVVVAHAQQPLAKQAFLSLKQLAALPLVLRERGSGSLEVVEHALASHDMRLDNMNLVMHIGSTEGIKSFLRHTNCLGIVPVAALQPELVGKEFRIISVKGLSVPRTFYFVHLQGKPSGLSATLLQFIRKRYNRK*