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SCNpilot_expt_1000_bf_scaffold_349_14

Organism: SCNPILOT_EXPT_1000_BF_Niastella_43_130

near complete RP 53 / 55 MC: 1 BSCG 51 / 51 ASCG 13 / 38
Location: 13793..15442

Top 3 Functional Annotations

Value Algorithm Source
Transcription termination factor Rho {ECO:0000256|HAMAP-Rule:MF_01884}; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_01884};; ATP-dependent helicase Rho {ECO:0000256|HAMAP-Rule:MF_01884}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 75.6
  • Coverage: 590.0
  • Bit_score: 828
  • Evalue 4.80e-237
Transcription termination factor Rho n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TF35_NIAKG similarity UNIREF
DB: UNIREF100
  • Identity: 75.6
  • Coverage: 590.0
  • Bit_score: 828
  • Evalue 3.40e-237
  • rbh
transcription termination factor Rho; K03628 transcription termination factor Rho similarity KEGG
DB: KEGG
  • Identity: 75.6
  • Coverage: 590.0
  • Bit_score: 828
  • Evalue 1.10e-237
  • rbh

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Taxonomy

Niastella koreensis → Niastella → Sphingobacteriales → Sphingobacteriia → Bacteroidetes → Bacteria

Sequences

DNA sequence
Length: 1650
ATGTACGATATCCTCCAACTGAACGACATGCTCGTTCCTGAGCTGCTTGATATAGCAGAACAACTAAGCATTGCTAACGCTAAAAAGCTTGACAAGCAAGAACTGATATATAAAATATTGGACAAACAGGCAATCGTCAACAGTGCCGGCGCCTCAGACAAAGCAGAAGAAAAGACAAGACGCAGGCGGGTGGTAAAGACCACCACCGCCAACAGCACGGAAGAAGCCATCGTGGAATCCGAACCGGCAAAACCGGCGGCAGCCCCTCAGAGAAAAAGGAAAGCGGTTGGCGACGCAGAAAAGAAAGGAGAGAAAAAGATAATCAAGAAAGCCAAAACGCCTCCTGTTGCAGGGGAAGACGCTCCGGAAGAAGAAAAGCTGCCATTGCTTGACCTGCCTGATATAGAGCCGGAAGATCAGCCGGAAGGAATACCCGAAGTAACCGTCTCTGTCGAAGAACCCCAGGTAGCAGAAGAGCCGCAGACAGAGCGGAAGAGCTATCCGCAGCGCCGCGACCAGGCGTTTAATATAGAGTTTGACGGGATAGTGATGAGCGAAGGAGTCCTGGAAATGATGCCTGACGGCTATGGTTTCCTGCGGAGCAGCGATTATAATTATCTTTCTTCCCCTGATGATATTTACGTCTCCCCTTCACAGATCAAGCTCTTCGGGTTAAAAACCGGGGATACGGTATCCGGCGCTGTTCGTCCGCCCAAAGAAGGAGAAAAATATTTCGCGCTGTTAAAGGTAGAAGCCATCAACGGCAAGTCGCCTGAAGAAGTGCGGGACCGGGTTCCATTCGATTACCTGACGCCTCTTTTCCCGTTTGAGAAGCTTAATCTTTTTACCCAGCCCTCGCTGTACAGCACGAGGATGATAGATCTGTTTACGCCTATAGGCAAGGGTCAGCGCGGACTGATCGTAGCCCAGCCCAAGACCGGTAAAACGGTTTTGCTAAAGGATATTGCCAATGCTATAGCAGAAAATCATCCCGAGTGTTATATGATGATCGTGCTGGTAGACGAAAGGCCGGAAGAAGTGACCGATATGGAGCGAAGCGTAAGAGCGGAAGTGATAGCCTCAACCTTTGATGAGCCGGCCGAGAAGCATGTTAAGGTTTCTACCATTGCGCTGCAAAAAGCGAAACGCCTGGTGGAATGTGGTCATGATGTGGTCATCCTGCTGGATTCGATCACCCGTTTGGCAAGGGCTCATAATACCGTAGCTCCTGCATCAGGCAAGGTGCTTTCCGGCGGTGTGGAAGCCAATGCCATGCAGAAGCCCAAACAGTTTTTTGGCGCAGCCAGGAAAATAGAAAACGGAGGCTCTCTTACTATACTGGCAACAGCATTGATAGATACCGGTTCAAAAATGGACGAGGTCATCTTTGAGGAATTTAAGGGAACGGGTAATATGGAGCTTCAGTTGGACAGGAGATTGGCCAACAGGAGGATCTTCCCTGCCATTGACCTGGTTGCTTCTTCTACAAGGCGCGAAGACCTTTTGCTCGACAGAGATGTGCTGAAGAGGATGCACCTGCTCCGGAATTATCTCGCCGATATGAATTCGGAAGAAGCTATGAATGAATTGCTGAAACGTATGCGCGGCACCAAAGACAACCAGGAGTTCCTGGCAAGCATGAACAGCTAA
PROTEIN sequence
Length: 550
MYDILQLNDMLVPELLDIAEQLSIANAKKLDKQELIYKILDKQAIVNSAGASDKAEEKTRRRRVVKTTTANSTEEAIVESEPAKPAAAPQRKRKAVGDAEKKGEKKIIKKAKTPPVAGEDAPEEEKLPLLDLPDIEPEDQPEGIPEVTVSVEEPQVAEEPQTERKSYPQRRDQAFNIEFDGIVMSEGVLEMMPDGYGFLRSSDYNYLSSPDDIYVSPSQIKLFGLKTGDTVSGAVRPPKEGEKYFALLKVEAINGKSPEEVRDRVPFDYLTPLFPFEKLNLFTQPSLYSTRMIDLFTPIGKGQRGLIVAQPKTGKTVLLKDIANAIAENHPECYMMIVLVDERPEEVTDMERSVRAEVIASTFDEPAEKHVKVSTIALQKAKRLVECGHDVVILLDSITRLARAHNTVAPASGKVLSGGVEANAMQKPKQFFGAARKIENGGSLTILATALIDTGSKMDEVIFEEFKGTGNMELQLDRRLANRRIFPAIDLVASSTRREDLLLDRDVLKRMHLLRNYLADMNSEEAMNELLKRMRGTKDNQEFLASMNS*