ggKbase home page

SCNpilot_expt_1000_bf_scaffold_502_30

Organism: SCNPILOT_EXPT_1000_BF_Niastella_43_130

near complete RP 53 / 55 MC: 1 BSCG 51 / 51 ASCG 13 / 38
Location: 34401..35027

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Mucilaginibacter paludis DSM 18603 RepID=H1Y4T9_9SPHI similarity UNIREF
DB: UNIREF100
  • Identity: 43.6
  • Coverage: 188.0
  • Bit_score: 167
  • Evalue 1.60e-38
Uncharacterized protein {ECO:0000313|EMBL:AIM36839.1}; TaxID=1538644 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. ML3W.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 45.7
  • Coverage: 197.0
  • Bit_score: 170
  • Evalue 2.10e-39
ECF subfamily RNA polymerase sigma-24 subunit; K03088 RNA polymerase sigma-70 factor, ECF subfamily similarity KEGG
DB: KEGG
  • Identity: 44.2
  • Coverage: 181.0
  • Bit_score: 155
  • Evalue 2.00e-35

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Sphingobacterium sp. ML3W → Sphingobacterium → Sphingobacteriales → Sphingobacteriia → Bacteroidetes → Bacteria

Sequences

DNA sequence
Length: 627
ATGCATAATTCCCCTTATTGCATTTTTATGAAAAAGGGTATCAATCCTGAACAACAGCTCGTGAGAGATATAAAAAGCGGTGATGCTTCAGCGTTTGATACATTGTATTGGAAATACCATAAAGCAGTTTACTTCAATATTCTCAGGCTTATAAAAGACCCCGACACTTCAAAAGATATTTTACAGGAAGTATTTATTACCCTCTGGATAAAAAGAAACACGCTAAGTCCTGAAATGCGCATTGGCGGGTGGCTGTTCACTACGAGTTACCATAAATGCATTGATCATTTAAGGCTTACTATTGCAGAGTCTCTTTGGGACGGTGAAGTAAGTATAGCTGACGAATGGATTGACTTAAGGAAAGAAAAAGAACAGGAGAGCCGCCTGCAACTGATACAACAGGCAGTGCATAACTTATCTCCGAAAAAGAGAGCAGTATTTGAACTATGCAAGCTTAAGGGTAAAACTTATGAAGAAACGGCGCGGGAGTTAAATATTTCAAAGTATACCGTTAAAGAATATCTCTCGGCAGCAATTATATATATAAAAAACTATATCCACAGGCAACCGCAATCGCCGGTTTCAATTTTACTTATTTTATCTGCTTTTTATCCCCCCTTTTTTTAG
PROTEIN sequence
Length: 209
MHNSPYCIFMKKGINPEQQLVRDIKSGDASAFDTLYWKYHKAVYFNILRLIKDPDTSKDILQEVFITLWIKRNTLSPEMRIGGWLFTTSYHKCIDHLRLTIAESLWDGEVSIADEWIDLRKEKEQESRLQLIQQAVHNLSPKKRAVFELCKLKGKTYEETARELNISKYTVKEYLSAAIIYIKNYIHRQPQSPVSILLILSAFYPPFF*