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SCNpilot_expt_1000_bf_scaffold_469_10

Organism: SCNPILOT_EXPT_300_BF_Thiobacillus_SCN2_64_69

near complete RP 52 / 55 MC: 2 BSCG 51 / 51 MC: 1 ASCG 13 / 38
Location: 8098..11508

Top 3 Functional Annotations

Value Algorithm Source
transcription-repair coupling factor; K03723 transcription-repair coupling factor (superfamily II helicase) [EC:3.6.4.-] id=12498290 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria similarity UNIREF
DB: UNIREF100
  • Identity: 100.0
  • Coverage: 999.99
  • Bit_score: 2254
  • Evalue 0.0
  • rbh
transcription-repair coupling factor; K03723 transcription-repair coupling factor (superfamily II helicase) [EC:3.6.4.-] similarity KEGG
DB: KEGG
  • Identity: 87.0
  • Coverage: 999.99
  • Bit_score: 1971
  • Evalue 0.0
Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969}; Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969};; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969};; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 87.0
  • Coverage: 999.99
  • Bit_score: 1971
  • Evalue 0.0

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Taxonomy

Thiobacillus denitrificans → Thiobacillus → Hydrogenophilales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 3411
ATGCTGTTCTCGCCCACCGCCCCTCCCTCCCGCCAGTCCGGCCTCGCCGGTGCCGCCGACGCACTGTGGCTGGCCGAACGCGCGCGCCATGGCGCGCCGCTGGCCGTGGTATGCGCCAGCGCCTGGGACGCGCAGCGGCTGGCCGAGGAGATTCGCTGGTTCGACGCCTGTCTGCGGATCTGCGTGTTTCCGGACTGGGAAACGCTGCCCTACGACAGCTTTTCGCCGCATCCCGATCTGATCTCGGAACGGCTGGCGACGCTGTATCCGATGTCGCGCGGCGAGTTCGACGTGCTGGTGGTGGCACTGACGACCGCGCTGGTACGGCTGGCGCCGCCCGCCTTTCTGGCCGCCCACACCTTCTTTCTCAAGCAGAAGGACCGTCTCGACGAGGCCGCCTTCCGCACGCAGATGACGCTGGGCGGCTATACCCACGTCAATCAGGTGTATACACCGGGCGAGTTTTCCATCCGCGGCGGTCTGATCGACCTTTTTCCCATGGGCAGCGCACTGCCCTACCGCATCGACCTCTTCGACGACGAGATCGAAACACTGCGCGCTTTCGACGTGGACAGCCAGCGCAGTCTCTATCCGGTCCCCGAGATTCGCCTGCTGCCGGCGCGCGAATTCCCCCTCGACGAAGCCGGCATCACGCGCTTCCGGCAGCATTTCCGCGAACGCTTCGAGGGGGACCCGTCCAAATCCAAGCTCTACAAAGACGTGAGCAACGGGCTTGCGCCCGCCGGTATCGAGTATTACCTGCCGCTCTTTTTCGAGACGACCGCGACGCTGTTCGACTATCTGCCCGCCTCGACCACCCTGGTGCTGCACGGCGCGCTGGACGAGGCCGGGCAGGCCTTCTGGACCGATGCGCAGAGCCGCCACCGGCTACTGTCCGGCGACCGTGACCGGCCACTGCTGTCGCCGGCCGAACTGTTCCTGCCGGTCGACGATTTCTTCTCGCGCGCCAAAGGCTGGCCGCAACTGCATCTGGCACAGGCCGGCGCAGGCCCGGCGCAACCGGTTCCGCCGATATCCGTAGACCGCCGCGAAGCGCACCCGGTCGCACGGCTGAAGGCTTTTGTCGAAGGCTTTGCCGGCCGCGTGCTGATCGTCGCACCCTCGGCCGGCCGCCGCGACACCCTGCACGAATACCTTGCCGAACACGATCTCGACGCGGCCCTCTGCGAGGGCTGGGCGGCCAACTGCCTCGACGCGCAGGCGCGGCTGCTGCTGACGCACGGGCCGCTGGCCGAGGGTTTCGTCGCCGCCGGCGCGGGGCTGGCCGTCGTCACCGAAACCGAGCTGTACGCGATTCCGCCGAAAACGCGGCGCGCCCGCGAGGCGCGCGCCACGCAGATCGACAACCTGCTGCGCGATCTCTCGGAACTGAAGCCGGGCGACCCGGTGGTGCACGCGCAATACGGGGTCGGCCAGTATCTCGGCCTCGTCAGCATGGACCTGGGCGACGGCGACACCGAGTTCCTCAAGCTGGAATACGCCAAGGGCGACACGCTCTACGTGCCGGTCGCCAACCTGCACCTGATCTCGCGCTACAGCGGCGCGGGCGAAGGCGAGGCGCCGCTGCACCGGCTGGGCACCGACCAGTGGGAAAAGGCGCGCCGGCGCGCCATGCAGGCGGCACGCGACACCGCCGCCGAGCTGCTGAATCTGTATGCGCTGCGCGCCGCGCGTGAAGGCCATGCCTTCGCATTCTCGCCGCACGACTACGAGGCCTTCGCCGAAGGCTTCGGCTTCGAGGAAACACCCGATCAGGCCGCCGCCATCGCCGCCGTCATGGCCGACATGCAGTCTGGCAAGCCGATGGACCGGCTGGTCTGCGGCGACGTCGGCTTCGGCAAGACCGAAGTCGCGCTGCGCGCCGCCTTCATGGCGGTGATGGGCGGCTATCAGGTCGCGGTGCTGGTGCCGACCACGCTGCTGGCCGAACAACATTTCAACAATTTCTCCGACCGCTTTTCGCAATGGCCGGTGAAGCTCGCCGAGCTGTCGCGCTTCCGTACCGCCAAGGAACAGGCCGCCGCGCTCGATGCACTGAAGGACGGCAAGCTCGACATCGTGATCGGCACCCACCGGCTGATCCAGAAGGACGTGAAATTCGCCCGTCTGGGCCTCGTCATCCTGGACGAGGAACACCGTTTCGGCGTGCGCCAGAAAGAACAGCTGAAAGCCCTGCGTGCCGAGGTGGACGTGCTGACGCTGACCGCGACGCCGATTCCGCGGACGCTGGCGATGTCGCTCGAAGGCATTCGAGACTTCTCGGTGATCGCCACCGCACCGCAGAAGCGGCTGGCGGTGAAAACCTTCGTACAGCCCTTCTCAGGCGGGCTGATCCGCGAAGCCGTGCTGCGCGAGCTGAAACGCGGCGGACAGGTCTATTTCCTGCACAACGAGGTCAGCACCATCGAATCGATGCGTGAGCGGCTGGAAAAACTGCTGCCCGAGGCGCGCATCCGGGTCGGCCATGGCCAGATGGGCGAACGCGAGCTGGAGCAGGTGATGCGCGATTTCTACCAGCAGCGCTACGACATCCTGCTGTGCACCACCATCATCGAAACCGGCATCGACATCCCGACCGCGAACACCATCCTCATCAACCGCGCCGACAAATTCGGGCTCGCACAGCTGCACCAGTTGCGCGGCCGCGTCGGCCGTTCGCACCACCAGGCCTTCGCCTATCTGCTGGTGGACGAGGACAGAAACCTTACACCCCAAGCGAAGAAACGCCTGGAAGCCATTCAATTAATGGAAGAATTGGGATCCGGGTTCCATCTCGCCATGCACGATCTGGAAATCCGCGGCGCGGGCGAAGTGCTGGGCGACAAGCAAAGCGGCGAAATCCTGGAGGTCGGTTTCTCGCTCTACAACGAGATGCTCGCCGGCGCCGTCGCCAGCCTCAAGGCCGGCAGGGAACCGGACATGAACCAGCCGCTCGACGTGGTCTCCGAAATCAATCTTCATCTGCCGGCGCTGCTGCCGGACGACTATTGCCCGGACGTGCACGAGCGGCTGGTGCTCTACAAGCGGCTGGCGACCTGCGCCGCGCCGGACGATCTGACGGCGATGCAGGAGGAGCTGGTCGACCGTTTCGGTGCGCTGCCCGATCCGGCCCGCGCGCTGCTCGCGGTGCACCGCCTGCGCATGGCCACGCGCGCCTACGGCATCGTCAAGCTCGACGCGTCCGGCGAGGGCATGAGCGTGCAGTTCGTGCCCAAGCCGCCCGTCGATCCGGGTAGAATTCTGCACTTGATCCAGGGCAAGGCCGGCTACCGCCTTGCCGGCCCGGACCGGTTGCGGCTGACGACGCCGCTGCCCGATCTGGCCCGGCGGCTGGGCGCCGTCAACGCCTTTCTCGCCGCCCTGGGCGATCCCCTTCCACCCGCTGCCTGA
PROTEIN sequence
Length: 1137
MLFSPTAPPSRQSGLAGAADALWLAERARHGAPLAVVCASAWDAQRLAEEIRWFDACLRICVFPDWETLPYDSFSPHPDLISERLATLYPMSRGEFDVLVVALTTALVRLAPPAFLAAHTFFLKQKDRLDEAAFRTQMTLGGYTHVNQVYTPGEFSIRGGLIDLFPMGSALPYRIDLFDDEIETLRAFDVDSQRSLYPVPEIRLLPAREFPLDEAGITRFRQHFRERFEGDPSKSKLYKDVSNGLAPAGIEYYLPLFFETTATLFDYLPASTTLVLHGALDEAGQAFWTDAQSRHRLLSGDRDRPLLSPAELFLPVDDFFSRAKGWPQLHLAQAGAGPAQPVPPISVDRREAHPVARLKAFVEGFAGRVLIVAPSAGRRDTLHEYLAEHDLDAALCEGWAANCLDAQARLLLTHGPLAEGFVAAGAGLAVVTETELYAIPPKTRRAREARATQIDNLLRDLSELKPGDPVVHAQYGVGQYLGLVSMDLGDGDTEFLKLEYAKGDTLYVPVANLHLISRYSGAGEGEAPLHRLGTDQWEKARRRAMQAARDTAAELLNLYALRAAREGHAFAFSPHDYEAFAEGFGFEETPDQAAAIAAVMADMQSGKPMDRLVCGDVGFGKTEVALRAAFMAVMGGYQVAVLVPTTLLAEQHFNNFSDRFSQWPVKLAELSRFRTAKEQAAALDALKDGKLDIVIGTHRLIQKDVKFARLGLVILDEEHRFGVRQKEQLKALRAEVDVLTLTATPIPRTLAMSLEGIRDFSVIATAPQKRLAVKTFVQPFSGGLIREAVLRELKRGGQVYFLHNEVSTIESMRERLEKLLPEARIRVGHGQMGERELEQVMRDFYQQRYDILLCTTIIETGIDIPTANTILINRADKFGLAQLHQLRGRVGRSHHQAFAYLLVDEDRNLTPQAKKRLEAIQLMEELGSGFHLAMHDLEIRGAGEVLGDKQSGEILEVGFSLYNEMLAGAVASLKAGREPDMNQPLDVVSEINLHLPALLPDDYCPDVHERLVLYKRLATCAAPDDLTAMQEELVDRFGALPDPARALLAVHRLRMATRAYGIVKLDASGEGMSVQFVPKPPVDPGRILHLIQGKAGYRLAGPDRLRLTTPLPDLARRLGAVNAFLAALGDPLPPAA*