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SCNpilot_expt_1000_bf_scaffold_708_16

Organism: SCNPILOT_EXPT_300_BF_Thiobacillus_SCN2_64_69

near complete RP 52 / 55 MC: 2 BSCG 51 / 51 MC: 1 ASCG 13 / 38
Location: comp(16239..17462)

Top 3 Functional Annotations

Value Algorithm Source
ispG, gcpE; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (EC:1.17.7.1); K03526 (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase [EC:1.17.7.1] id=12498003 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria similarity UNIREF
DB: UNIREF100
  • Identity: 100.0
  • Coverage: 408.0
  • Bit_score: 798
  • Evalue 3.70e-228
  • rbh
ispG, gcpE; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (EC:1.17.7.1); K03526 (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase [EC:1.17.7.1] similarity KEGG
DB: KEGG
  • Identity: 91.1
  • Coverage: 405.0
  • Bit_score: 739
  • Evalue 4.90e-211
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin) {ECO:0000256|HAMAP-Rule:MF_00159}; EC=1.17.7.1 {ECO:0000256|SAAS:SAAS00088795};; EC=1.17.7.3 {ECO:0000256|HAMAP-Rule:MF_00159};; 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase {ECO:0000256|HAMAP-Rule:MF_00159}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 91.1
  • Coverage: 405.0
  • Bit_score: 739
  • Evalue 2.20e-210

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Taxonomy

Thiobacillus denitrificans → Thiobacillus → Hydrogenophilales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1224
ATGTCCCAGATTGTCAGACGTCCCACCCGTCAGGTGCGGATCGGCCCGGTACGGGTCGGGGGCGACGCGCCCGTGGCGGTGCAGTCGATGACCAACACCGATACGGTCGACGTTACCGGTACCGTCAAGCAGGTTCAGGCGCTGGCCGAGGCCGGGTCCGAACTGGTACGGCTCACGGTCAACTCGCTGGAGGCCGCCGCCGCGGTGCCGCGCATCCGCGAGCGGCTCGACGTGCTGGGCTGTCGCGTGCCGCTGATCGGCGATTTTCATTTCAACGGCCACAAGCTGCTGACGCAGGTGCCCGAATGCGCACAGGCGCTCGCCAAGCTGCGCATCAATCCGGGCAACATCGGGCGCGGTACGAAGCGCGACGAACAGTTCGCCACGCTGATCGAAATCGCCTGTCGCTACGACAAGCCGGTGCGCATCGGCGTCAACTGGGGCAGCCTCGATCAGGCCATCGCTGCGCGCCTGATGGATGAGAACGCCCGGCGTGTCCAGCCCGAGGAGGCCGAAGTCGTGATGCGCCGCGCGATGGTCGTGTCCGCGCTGGAATCGGCGAAAAAAGCCGAGGAATTCGGTCTCGGCGGCGACCGGATCATTCTGTCGTGCAAGATGAGCCGGGTGCAGGACCTGATCGCGGTGTACCGCGATCTCGCGTCGCAATGCGACTATCCGCTGCACCTCGGTCTGACCGAAGCCGGCATGGGCAGCAAGGGCGTCGTCGCCTCGACTGCCGCGCTGGCCGTGCTGCTGCAGGACGGCATCGGCGATACCATCCGGATTTCGCTCACGCCCGAGCCCGGCGGCGACCGCACGCAGGAGGTGCGCGTCGGCCAGGAAATCCTGCAATCGCTGGGTCTGCGGGCCTTCACGCCACAGGTCACCGCCTGCCCGGGCTGCGGCCGCACCACTTCGACCGTGTTCCAGGAACTTGCGGCCGACATCGAGACCTATCTGCGCAGGCAGATGCCGGTCTGGCGCAGCCAGTACCCGGGTGTCGAAGCCATGCAGGTCGCAGTGATGGGCTGCGTGGTCAACGGGCCCGGCGAATCCAAGCACGCCAATATCGGCATTTCGCTGCCCGGCACCGGCGAAGTGCCGGTGGCGCCGGTCTATGTCGACGGCGAAAAGACCGTCACCCTGAAAGGCGAGCGCATTGCGGCTGAATTTCAGGCCATCGTCGAGGACTACGTGCAACGGCGTTACGGCCGGGCAGCGTGA
PROTEIN sequence
Length: 408
MSQIVRRPTRQVRIGPVRVGGDAPVAVQSMTNTDTVDVTGTVKQVQALAEAGSELVRLTVNSLEAAAAVPRIRERLDVLGCRVPLIGDFHFNGHKLLTQVPECAQALAKLRINPGNIGRGTKRDEQFATLIEIACRYDKPVRIGVNWGSLDQAIAARLMDENARRVQPEEAEVVMRRAMVVSALESAKKAEEFGLGGDRIILSCKMSRVQDLIAVYRDLASQCDYPLHLGLTEAGMGSKGVVASTAALAVLLQDGIGDTIRISLTPEPGGDRTQEVRVGQEILQSLGLRAFTPQVTACPGCGRTTSTVFQELAADIETYLRRQMPVWRSQYPGVEAMQVAVMGCVVNGPGESKHANIGISLPGTGEVPVAPVYVDGEKTVTLKGERIAAEFQAIVEDYVQRRYGRAA*