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SCNpilot_expt_1000_bf_scaffold_493_27

Organism: SCNPILOT_EXPT_1000_BF_Afipia_63_13

near complete RP 52 / 55 MC: 4 BSCG 51 / 51 MC: 1 ASCG 13 / 38
Location: 13443..14474

Top 3 Functional Annotations

Value Algorithm Source
DNA-directed RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Short=RNAP subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00059};; RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Transcriptase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 96.8
  • Coverage: 339.0
  • Bit_score: 656
  • Evalue 2.70e-185
rpoA; DNA-directed RNA polymerase subunit alpha (EC:2.7.7.6); K03040 DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] similarity KEGG
DB: KEGG
  • Identity: 96.8
  • Coverage: 339.0
  • Bit_score: 653
  • Evalue 3.90e-185
  • rbh
DNA-directed RNA polymerase subunit alpha n=1 Tax=Afipia sp. 1NLS2 RepID=D6VAC0_9BRAD similarity UNIREF
DB: UNIREF100
  • Identity: 96.8
  • Coverage: 339.0
  • Bit_score: 656
  • Evalue 1.90e-185
  • rbh

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Taxonomy

Afipia sp. 1NLS2 → Afipia → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1032
ATGGGTGACCCAGTGACGATCCAGAAAAATTGGCAAGAACTTATCCGACCGAACAAGCTTCATGTGACGCCGGGTGCCGACTCGGCCCGCTTTGCGACCCTGGTTGCCGAGCCGCTCGAGCGTGGCTTCGGCCAGACCCTCGGCAACGCGCTGCGCCGCGTGCTGCTGTCCTCGCTGCAGGGCGCGGCCGTGCAGTCGGTTCACATCGACGGCGTGCTGCACGAGTTCTCCTCGATCGCCGGTGTGCGTGAAGACGTCACCGACATCGTGCTCAACATCAAGGACATCTCGATCAAGATGCAGGGCGAAGGCCCCAAGCGCATGGTCGTGAAGAAGCAGGGTCCGGGCGTCGTCACGGCAGGCGACATCCAGACTGTCGGCGATGTCGTGATCCTCAATCCCGAGCTGCAGCTCTGCACGCTGGACGATGGCGCCGAGATCCGCATGGAGTTCACCGTGAACTCCGGCAAGGGCTACGTCGCCGCCGACCGCAACCGTCCGGAAGACGCGCCGATCGGTCTGATTCCGGTCGACAGCCTGTTCTCGCCGGTCCGCAAGGTGTCCTACAAGGTCGAGAACACCCGTGAGGGTCAGATCCTCGACTACGACAAGCTGACGCTGACGATCGAGACCAACGGCGCGATCTCGCCGGAAGACGCGCTCGCTTATTCGGCGCGCATCCTGCAGGATCAGCTCAACGTGTTCGTCAACTTCGAAGAGCCGCGCAAGGAAGTCGCGCAGGAGATCATTCCGGATCTCGCCTTCAACCCGGCCTTCCTCAAGAAGGTGGACGAGCTCGAGCTGTCGGTGCGTTCGGCGAACTGCCTGAAGAACGACAACATCGTCTACATCGGCGACCTGGTGCAGAAGTCGGAAGCGGAAATGCTCCGCACCCCGAACTTCGGCCGCAAGTCGCTGAACGAGATCAAGGAAGTGCTGGCCCAGATGGGTCTGCATCTCGGCATGGAAGTGCCCGGCTGGCCGCCGGAGAACATCGACGAGCTGGCCAAGCGCTTCGAGGATCATTACTGA
PROTEIN sequence
Length: 344
MGDPVTIQKNWQELIRPNKLHVTPGADSARFATLVAEPLERGFGQTLGNALRRVLLSSLQGAAVQSVHIDGVLHEFSSIAGVREDVTDIVLNIKDISIKMQGEGPKRMVVKKQGPGVVTAGDIQTVGDVVILNPELQLCTLDDGAEIRMEFTVNSGKGYVAADRNRPEDAPIGLIPVDSLFSPVRKVSYKVENTREGQILDYDKLTLTIETNGAISPEDALAYSARILQDQLNVFVNFEEPRKEVAQEIIPDLAFNPAFLKKVDELELSVRSANCLKNDNIVYIGDLVQKSEAEMLRTPNFGRKSLNEIKEVLAQMGLHLGMEVPGWPPENIDELAKRFEDHY*