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SCNpilot_expt_1000_bf_scaffold_1140_5

Organism: SCNPILOT_EXPT_1000_BF_Thiobacillus_strain2_65_27

near complete RP 51 / 55 BSCG 51 / 51 MC: 3 ASCG 12 / 38 MC: 2
Location: comp(3975..5273)

Top 3 Functional Annotations

Value Algorithm Source
rumA; 23S rRNA (uracil-5-)-methyltransferase RumA (EC:2.1.1.-); K03215 23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190] similarity KEGG
DB: KEGG
  • Identity: 86.3
  • Coverage: 432.0
  • Bit_score: 748
  • Evalue 8.60e-214
  • rbh
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD {ECO:0000255|HAMAP-Rule:MF_01010}; EC=2.1.1.190 {ECO:0000255|HAMAP-Rule:MF_01010};; 23S rRNA(m5U1939)-methyltransferase {ECO:0000255|HAMAP-Rule:MF_01010}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 86.3
  • Coverage: 432.0
  • Bit_score: 748
  • Evalue 3.80e-213
23S rRNA methyltransferase n=1 Tax=Thiobacillus thioparus RepID=UPI0003787200 similarity UNIREF
DB: UNIREF100
  • Identity: 87.3
  • Coverage: 432.0
  • Bit_score: 754
  • Evalue 6.50e-215
  • rbh

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Taxonomy

Thiobacillus denitrificans → Thiobacillus → Hydrogenophilales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1299
ATGAACCCGATCGTCGACATCCTCTCCCTCGACCACGAGGGCCACGGCGTCGCGCGCCTCGACGGCAAGGTGACTTTCGTCGACGGCGCGCTGCCCGGCGAGCGCGCGGAGATCGCGGTCTATCGCAGGCACGCCAAATACAATTCCGCCAACGCACTCGCCATCCTCAAGGCCAGCGCCCAGCGTACCGACCCACGCTGCCCCCATTTCGGCCGCTGCGGCGGTTGCTCGATGCAGCATCTCGAACCCGGCGCCCAGGTCGCCGCCAAGCAGCGCGTACTGGAGGAAAACCTTGCGCGCATCGGCAAGGTACACCCCGACGTTATCCTCCCCGCCCTGCACGGCCCGTCCTGGGGCTATCGCCACCGCGCACGGCTGTCCGCACGATGGGTCGACAAGAAAGGCGGCGCCCTGGTCGGCTTCCACGAAAAGCGCTCCAGCTTCATCACCGACATGGCGAGCTGCGAAGTCCTCACTCCCGAGGTCTCGGCGCTGATCCAGCCGCTGCGCGAACTGATCGGGATGCTGTCGAACGCCAACCGTATTCCGCAGATCGAGGTCGCGGTGGGTGACGCCGTCACCGTGCTGGTGTTCCGTCTGCTGGAACCCTGGACCGACGACGACGCTGCCCGCGTGCGCGCCTTCGCCGACACCCACCGCGTGCAGGTGTGGGAGCAGAAAAAAGGCCCGGACACCGCCCGGCCGTTCTGGCCGGACATCGCGCCGGAACTCAGCTATCACCTGCTCGAATTCGGTCTCGTCATGCCGTTCCGGCCGACCGAATTCACCCAGGTCAACGCCGCGATGAACCGCGCCCTGGTTAGCCGCGCGCTGCGCCTGCTCGCTCCGCAGCCGGGCGAGCGCATCGCCGACCTGTTCTGCGGCCTGGGCAACTTTACCCTGCCCATCGCACGCCACGGGGCCGCCGTGCTCGGCATCGAAGGCAGCCGCGACCTGGTCGCCCGCGCACGCGACAACGCCGTGCGCAATGGCCTGTCCAACGCAGATTTCGAAGTCGACAACCTGTTCGAGATGACGCCGGAGAAATTCGCCACACTCGGGCCTTTCGACAAGCTCCTCATCGATCCGCCGCGCTCCGGCGCCATCGAGCTCGTCAAGTCGCTCCCCGACGCCGGCGCACCAGGCCGCATCGTCTACGTCTCCTGCGACGCCGCCACCCTGGCGCGCGATGCCGAGGTGCTCGTACACGTCAAGGGCTACCGCCTCAAGGCTGCCGGGGTCGCCAACATGTTCCCGCACACCGCGCATGTGGAATCGATCGCGCTTTTCGAGCGCTAA
PROTEIN sequence
Length: 433
MNPIVDILSLDHEGHGVARLDGKVTFVDGALPGERAEIAVYRRHAKYNSANALAILKASAQRTDPRCPHFGRCGGCSMQHLEPGAQVAAKQRVLEENLARIGKVHPDVILPALHGPSWGYRHRARLSARWVDKKGGALVGFHEKRSSFITDMASCEVLTPEVSALIQPLRELIGMLSNANRIPQIEVAVGDAVTVLVFRLLEPWTDDDAARVRAFADTHRVQVWEQKKGPDTARPFWPDIAPELSYHLLEFGLVMPFRPTEFTQVNAAMNRALVSRALRLLAPQPGERIADLFCGLGNFTLPIARHGAAVLGIEGSRDLVARARDNAVRNGLSNADFEVDNLFEMTPEKFATLGPFDKLLIDPPRSGAIELVKSLPDAGAPGRIVYVSCDAATLARDAEVLVHVKGYRLKAAGVANMFPHTAHVESIALFER*